Variant report

Variant	rs6904369
Chromosome Location	chr6:118418676-118418677
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17079812	1.00[MEX][hapmap]
rs2484143	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2484147	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2501514	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2501515	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2501521	0.91[YRI][hapmap]
rs2516065	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2516066	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2516067	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2516068	0.83[AMR][1000 genomes]
rs4492222	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56974574	0.83[AMR][1000 genomes]
rs58133996	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58870459	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59525222	0.83[AMR][1000 genomes]
rs59568380	0.83[AMR][1000 genomes]
rs60972925	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6569000	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6902543	1.00[MEX][hapmap]
rs6938511	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs71543241	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766441	0.83[AMR][1000 genomes]
rs73766442	0.83[AMR][1000 genomes]
rs7762210	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs7766053	0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9374714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9385034	1.00[MEX][hapmap]
rs9387556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9398482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9398483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118414600-118420600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:118418000-118419400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118418000-118421400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118418600-118419400	Weak transcription	HSMMtube	muscle

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