Variant report

Variant	rs9387556
Chromosome Location	chr6:118414021-118414022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2484143	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2484147	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2501514	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2501515	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2516065	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2516066	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2516067	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2516068	0.83[AMR][1000 genomes]
rs4492222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56974574	0.83[AMR][1000 genomes]
rs58133996	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58870459	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59525222	0.83[AMR][1000 genomes]
rs59568380	0.83[AMR][1000 genomes]
rs60972925	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6569000	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6904369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938511	0.83[AMR][1000 genomes]
rs71543241	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766441	0.83[AMR][1000 genomes]
rs73766442	0.83[AMR][1000 genomes]
rs7762210	0.83[AMR][1000 genomes]
rs7766053	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9374714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9398482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9398483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118409600-118414600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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