Variant report
| Variant | rs2501515 |
|---|---|
| Chromosome Location | chr6:118432557-118432558 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs2484143 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2484147 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2501514 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2501521 | 1.00[YRI][hapmap] |
| rs2516065 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2516066 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2516067 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2516068 | 1.00[AMR][1000 genomes] |
| rs4492222 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs56974574 | 1.00[AMR][1000 genomes] |
| rs58133996 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58870459 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59525222 | 1.00[AMR][1000 genomes] |
| rs59568380 | 1.00[AMR][1000 genomes] |
| rs60972925 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6569000 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6904369 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6938511 | 1.00[AMR][1000 genomes] |
| rs71543241 | 0.95[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73766441 | 1.00[AMR][1000 genomes] |
| rs73766442 | 1.00[AMR][1000 genomes] |
| rs73766444 | 0.83[AMR][1000 genomes] |
| rs7762210 | 1.00[AMR][1000 genomes] |
| rs7766053 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9374714 | 0.98[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9387556 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9398482 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9398483 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv428153 | chr6:118430517-118586974 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118428000-118436200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr6:118431000-118432600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
