Variant report

Variant	rs6902543
Chromosome Location	chr6:118275811-118275812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11968302	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2484147	1.00[MEX][hapmap]
rs6904369	1.00[MEX][hapmap]
rs9385034	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118269800-118279200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118273200-118277000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118273200-118277200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:118273200-118277200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:118273400-118277000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:118273400-118277400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:118273400-118277400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:118273400-118277400	Weak transcription	Brain Substantia Nigra	brain
9	chr6:118273400-118277600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:118273400-118282200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:118273600-118276800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:118273600-118277200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:118273600-118277400	Weak transcription	Brain Germinal Matrix	brain
14	chr6:118273800-118276600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:118274000-118276400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:118274200-118277800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:118275000-118276400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:118275800-118279200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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