Variant report

Variant	rs61019727
Chromosome Location	chr6:118347321-118347322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12110607	1.00[EUR][1000 genomes]
rs4132663	1.00[EUR][1000 genomes]
rs4276535	1.00[EUR][1000 genomes]
rs4307205	1.00[EUR][1000 genomes]
rs4587199	1.00[EUR][1000 genomes]
rs5003341	1.00[EUR][1000 genomes]
rs55752923	1.00[EUR][1000 genomes]
rs56993874	1.00[EUR][1000 genomes]
rs58861108	1.00[EUR][1000 genomes]
rs60541620	1.00[EUR][1000 genomes]
rs6568998	1.00[EUR][1000 genomes]
rs6901514	1.00[EUR][1000 genomes]
rs6935478	1.00[EUR][1000 genomes]
rs73521539	0.86[AFR][1000 genomes]
rs73521541	1.00[EUR][1000 genomes]
rs73525652	1.00[EUR][1000 genomes]
rs73766425	1.00[EUR][1000 genomes]
rs73768145	1.00[EUR][1000 genomes]
rs7775102	1.00[EUR][1000 genomes]
rs7775110	1.00[EUR][1000 genomes]
rs9385033	1.00[EUR][1000 genomes]
rs9385034	1.00[EUR][1000 genomes]
rs9387541	1.00[EUR][1000 genomes]
rs9489309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118338800-118352400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118343400-118354800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:118347200-118347600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links