Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118415452..118418143-chr6:118419953..118422521,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12110607	1.00[EUR][1000 genomes]
rs4132663	1.00[EUR][1000 genomes]
rs4307205	1.00[EUR][1000 genomes]
rs4557559	0.81[ASW][hapmap];0.82[MKK][hapmap];0.83[YRI][hapmap]
rs4587199	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4946321	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5003341	1.00[EUR][1000 genomes]
rs55752923	1.00[EUR][1000 genomes]
rs56993874	1.00[EUR][1000 genomes]
rs58861108	1.00[EUR][1000 genomes]
rs60541620	1.00[EUR][1000 genomes]
rs61019727	1.00[EUR][1000 genomes]
rs6568998	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901514	1.00[EUR][1000 genomes]
rs6935478	1.00[EUR][1000 genomes]
rs73521541	1.00[EUR][1000 genomes]
rs73525652	1.00[EUR][1000 genomes]
rs73766425	1.00[EUR][1000 genomes]
rs73768145	1.00[EUR][1000 genomes]
rs7775102	1.00[EUR][1000 genomes]
rs7775110	1.00[EUR][1000 genomes]
rs9385033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9385034	0.81[ASW][hapmap];0.82[MKK][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9387541	1.00[EUR][1000 genomes]
rs9489309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118414600-118420600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:118418000-118421400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:118419400-118422000	Weak transcription	Fetal Brain Male	brain

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