Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12110607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4132663	1.00[EUR][1000 genomes]
rs4276535	1.00[EUR][1000 genomes]
rs4307205	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4509154	1.00[AFR][1000 genomes]
rs4587199	1.00[EUR][1000 genomes]
rs5003341	1.00[EUR][1000 genomes]
rs55752923	1.00[EUR][1000 genomes]
rs56993874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58861108	1.00[EUR][1000 genomes]
rs60541620	1.00[EUR][1000 genomes]
rs61019727	1.00[EUR][1000 genomes]
rs6568998	1.00[EUR][1000 genomes]
rs6901514	1.00[EUR][1000 genomes]
rs6935442	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6935478	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521539	1.00[AMR][1000 genomes]
rs73521541	1.00[EUR][1000 genomes]
rs73525652	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768145	1.00[EUR][1000 genomes]
rs7775102	1.00[EUR][1000 genomes]
rs7775110	1.00[EUR][1000 genomes]
rs9385033	1.00[EUR][1000 genomes]
rs9385034	1.00[EUR][1000 genomes]
rs9387541	1.00[EUR][1000 genomes]
rs9489309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118377200-118408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118377600-118379200	Enhancers	Cortex derived primary cultured neurospheres	brain

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