Variant report

Variant	rs9398527
Chromosome Location	chr6:120095309-120095310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120093516..120095597-chr6:120099794..120101469,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13200280	0.85[EUR][1000 genomes]
rs1341501	0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs1884255	0.83[EUR][1000 genomes]
rs1884256	0.89[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2357678	0.85[ASN][1000 genomes]
rs34290353	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4946443	0.85[EUR][1000 genomes]
rs6569084	0.81[CEU][hapmap]
rs6569088	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6569089	0.84[ASN][1000 genomes]
rs6913597	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6922103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6930071	0.80[EUR][1000 genomes]
rs6933847	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs706858	0.81[EUR][1000 genomes]
rs72967111	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739078	0.85[ASN][1000 genomes]
rs7746982	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7747886	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7755856	0.85[EUR][1000 genomes]
rs7758447	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7763039	0.86[ASN][1000 genomes]
rs7771446	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7771532	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7776137	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9320702	0.84[ASN][1000 genomes]
rs9374818	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9374826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374832	0.85[EUR][1000 genomes]
rs9387678	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387679	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9398527	MAN1A1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120093600-120096600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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