Variant report

Variant	rs9387679
Chromosome Location	chr6:120070442-120070443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13200280	0.84[EUR][1000 genomes]
rs1341500	0.81[EUR][1000 genomes]
rs1341501	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1884255	0.84[EUR][1000 genomes]
rs1884256	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2103845	0.81[EUR][1000 genomes]
rs2357678	0.82[ASN][1000 genomes]
rs34290353	0.96[EUR][1000 genomes]
rs4946443	0.84[EUR][1000 genomes]
rs6569084	0.81[EUR][1000 genomes]
rs6569088	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569089	0.83[ASN][1000 genomes]
rs6913189	0.83[ASN][1000 genomes]
rs6913597	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6922103	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6930071	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6933847	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs706858	0.82[EUR][1000 genomes]
rs72967111	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7739068	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7739078	0.81[ASN][1000 genomes]
rs7746982	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7747886	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755856	0.84[EUR][1000 genomes]
rs7758447	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7763039	0.82[ASN][1000 genomes]
rs7771446	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7771532	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776137	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9320699	0.80[EUR][1000 genomes]
rs9320702	0.89[ASN][1000 genomes]
rs9372547	0.80[EUR][1000 genomes]
rs9374816	0.80[EUR][1000 genomes]
rs9374818	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374826	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374832	0.84[EUR][1000 genomes]
rs9387672	0.80[EUR][1000 genomes]
rs9387678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398527	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9481955	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120070000-120070800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:120070000-120070800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:120070200-120070600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:120070200-120071200	Enhancers	Primary hematopoietic stem cells	blood

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