Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:119669713..119672817-chr6:120059087..120062247,3	K562	blood:
2	chr6:120061952..120063781-chr6:120064184..120066121,2	K562	blood:
3	chr6:119669713..119671719-chr6:120059776..120062247,2	K562	blood:
4	chr6:119468339..119471013-chr6:120060757..120063012,2	MCF-7	breast:
5	chr6:120059793..120063452-chr6:120063647..120067024,5	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction
ENSG00000111885	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1040656	0.84[ASN][1000 genomes]
rs1884254	0.81[ASN][1000 genomes]
rs1884256	0.89[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2207611	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs4310086	0.85[ASN][1000 genomes]
rs6569084	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs6569085	0.92[ASN][1000 genomes]
rs6569088	0.80[EUR][1000 genomes]
rs6899335	0.90[ASN][1000 genomes]
rs6913189	0.81[EUR][1000 genomes]
rs6913597	0.92[EUR][1000 genomes]
rs6916609	0.83[ASN][1000 genomes]
rs6933847	0.92[EUR][1000 genomes]
rs72967111	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7746982	0.85[EUR][1000 genomes]
rs7747886	0.80[EUR][1000 genomes]
rs7757918	0.81[ASN][1000 genomes]
rs7771446	0.84[EUR][1000 genomes]
rs7771532	0.80[EUR][1000 genomes]
rs7776137	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9320702	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9372551	0.84[ASN][1000 genomes]
rs9374818	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9374819	0.92[ASN][1000 genomes]
rs9374827	0.83[ASN][1000 genomes]
rs9385082	0.82[ASN][1000 genomes]
rs9387675	0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs9387678	0.81[EUR][1000 genomes]
rs9387679	0.81[EUR][1000 genomes]
rs9387681	0.83[ASN][1000 genomes]
rs9401171	0.90[ASN][1000 genomes]
rs9481958	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120060200-120063200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:120060200-120063600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:120061200-120063400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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