Variant report

Variant	rs1884254
Chromosome Location	chr6:120040556-120040557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119671503..119673094-chr6:120039219..120042156,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1040656	0.88[ASN][1000 genomes]
rs1156148	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1156149	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12197190	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1341496	0.85[ASN][1000 genomes]
rs1417842	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1417844	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1417845	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1884255	0.81[ASN][1000 genomes]
rs1964836	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2103845	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2207611	0.96[CEU][hapmap];0.96[CHB][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2357678	0.84[EUR][1000 genomes]
rs4310086	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4946435	0.87[EUR][1000 genomes]
rs6569084	0.85[JPT][hapmap]
rs6569085	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6569089	0.84[EUR][1000 genomes]
rs6899335	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6916609	0.88[ASN][1000 genomes]
rs767398	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7739078	0.84[EUR][1000 genomes]
rs7757918	0.85[ASN][1000 genomes]
rs7758447	0.82[ASN][1000 genomes]
rs7763039	0.83[EUR][1000 genomes]
rs9320700	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372550	0.91[EUR][1000 genomes]
rs9372551	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9372553	0.88[EUR][1000 genomes]
rs9374815	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374819	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9374827	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9385082	0.87[ASN][1000 genomes]
rs9387673	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387675	0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387681	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9398521	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9401163	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9401164	0.87[EUR][1000 genomes]
rs9401171	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9481954	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9481958	0.91[CHB][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9489766	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120038600-120048600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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