Variant report

Variant	rs9401163
Chromosome Location	chr6:119990787-119990788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1040656	0.84[ASN][1000 genomes]
rs1156148	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1156149	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12197190	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1341496	0.82[ASN][1000 genomes]
rs1417842	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1417844	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1417845	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1884254	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1964836	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2103845	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs2207611	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2357678	0.81[EUR][1000 genomes]
rs4310086	0.86[EUR][1000 genomes]
rs4946435	0.83[EUR][1000 genomes]
rs6569084	0.86[JPT][hapmap]
rs6569085	0.82[ASN][1000 genomes]
rs6569089	0.81[EUR][1000 genomes]
rs6899335	0.84[ASN][1000 genomes]
rs6916609	0.85[ASN][1000 genomes]
rs767398	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7739078	0.81[EUR][1000 genomes]
rs7757918	0.82[ASN][1000 genomes]
rs7763039	0.81[EUR][1000 genomes]
rs9320700	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372550	0.87[EUR][1000 genomes]
rs9372551	0.87[EUR][1000 genomes]
rs9372553	0.86[EUR][1000 genomes]
rs9374815	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374819	0.82[ASN][1000 genomes]
rs9374827	0.86[EUR][1000 genomes]
rs9385082	0.83[ASN][1000 genomes]
rs9387673	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9387675	0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9398521	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401164	0.87[EUR][1000 genomes]
rs9401171	0.84[ASN][1000 genomes]
rs9481954	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9481958	0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9489766	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119989000-119991000	Enhancers	Dnd41	blood
2	chr6:119989000-119991400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:119989000-119991800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:119989400-119992400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:119989600-119991000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:119989600-119991200	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:119990000-119991000	Enhancers	HUVEC	blood vessel
8	chr6:119990400-119990800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:119990400-119990800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:119990400-119990800	Enhancers	NHDF-Ad	bronchial
11	chr6:119990400-119991200	Enhancers	Monocytes-CD14+_RO01746	blood

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