Variant report

Variant	rs6569085
Chromosome Location	chr6:120059980-120059981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119669713..119672817-chr6:120059087..120062247,3	K562	blood:
2	chr6:119669713..119671719-chr6:120059776..120062247,2	K562	blood:
3	chr6:119669232..119674283-chr6:120058863..120061858,5	MCF-7	breast:
4	chr6:120059793..120063452-chr6:120063647..120067024,5	K562	blood:
5	chr6:120048345..120051007-chr6:120058358..120060686,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1156148	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1156149	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12197190	0.82[ASN][1000 genomes]
rs1417844	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1417845	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1884254	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1964836	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2103845	0.92[ASN][1000 genomes]
rs2207611	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2357678	0.82[EUR][1000 genomes]
rs4310086	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4946435	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6569089	0.84[EUR][1000 genomes]
rs6899335	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7739078	0.84[EUR][1000 genomes]
rs7763039	0.84[EUR][1000 genomes]
rs9320700	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9372550	0.92[EUR][1000 genomes]
rs9372551	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9372553	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9374815	0.81[ASN][1000 genomes]
rs9374819	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374827	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9387673	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9387675	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387681	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9398521	0.81[ASN][1000 genomes]
rs9401163	0.82[ASN][1000 genomes]
rs9401164	0.90[EUR][1000 genomes]
rs9401171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9481954	0.81[ASN][1000 genomes]
rs9481958	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9489766	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120057000-120060800	Enhancers	Fetal Brain Male	brain
2	chr6:120058000-120060600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:120059400-120060200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:120059400-120061200	Enhancers	Fetal Brain Female	brain
5	chr6:120059600-120060200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:120059800-120060000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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