Variant report

Variant	rs9401171
Chromosome Location	chr6:120057953-120057954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120057823..120059788-chr6:120064603..120067177,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1156148	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1156149	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12197190	0.83[ASN][1000 genomes]
rs1417844	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1417845	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1884254	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1964836	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2103845	0.91[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs2207611	0.84[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2357678	0.82[EUR][1000 genomes]
rs4310086	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946435	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6569084	0.86[JPT][hapmap]
rs6569085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569089	0.84[EUR][1000 genomes]
rs6899335	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739078	0.84[EUR][1000 genomes]
rs7763039	0.83[EUR][1000 genomes]
rs9320700	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372550	0.91[EUR][1000 genomes]
rs9372551	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9372553	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9374815	0.82[ASN][1000 genomes]
rs9374819	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374827	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387673	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9387675	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9387681	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9398521	0.82[ASN][1000 genomes]
rs9401163	0.84[ASN][1000 genomes]
rs9401164	0.89[EUR][1000 genomes]
rs9481954	0.82[ASN][1000 genomes]
rs9481958	0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9489766	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120056000-120059000	Enhancers	Fetal Stomach	stomach
2	chr6:120056200-120058200	Enhancers	Fetal Lung	lung
3	chr6:120056400-120058000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:120056600-120058200	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:120056800-120059800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:120057000-120060800	Enhancers	Fetal Brain Male	brain
7	chr6:120057200-120058000	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr6:120057400-120058000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:120057400-120058200	Enhancers	Brain Angular Gyrus	brain
10	chr6:120057400-120058200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:120057400-120058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:120057600-120058000	Flanking Active TSS	Colon Smooth Muscle	Colon
13	chr6:120057600-120058200	Enhancers	Brain Germinal Matrix	brain
14	chr6:120057600-120058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:120057600-120058400	Enhancers	Brain Hippocampus Middle	brain
16	chr6:120057600-120059400	Weak transcription	Fetal Brain Female	brain
17	chr6:120057800-120058000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr6:120057800-120058200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:120057800-120058200	Enhancers	Fetal Thymus	thymus
20	chr6:120057800-120058200	Enhancers	Pancreas	Pancrea
21	chr6:120057800-120058200	Enhancers	Stomach Smooth Muscle	stomach

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