Variant report

Variant	rs9399028
Chromosome Location	chr6:132751416-132751417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1000848	0.85[ASN][1000 genomes]
rs1000849	0.84[ASN][1000 genomes]
rs12660839	0.83[ASN][1000 genomes]
rs12663764	0.85[ASN][1000 genomes]
rs1338937	0.86[JPT][hapmap]
rs1338938	0.84[ASN][1000 genomes]
rs1538307	0.84[ASN][1000 genomes]
rs2153175	0.84[ASN][1000 genomes]
rs2185185	0.84[ASN][1000 genomes]
rs2211095	0.88[ASN][1000 genomes]
rs2327242	0.84[ASN][1000 genomes]
rs2327243	0.85[ASN][1000 genomes]
rs2327244	0.90[ASN][1000 genomes]
rs2876186	0.84[ASN][1000 genomes]
rs2876187	0.88[ASN][1000 genomes]
rs4377800	0.88[ASN][1000 genomes]
rs4489176	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4515403	0.88[ASN][1000 genomes]
rs4529319	0.88[ASN][1000 genomes]
rs4897580	0.88[ASN][1000 genomes]
rs6569796	0.88[ASN][1000 genomes]
rs6900501	0.87[CHB][hapmap]
rs6906574	0.82[JPT][hapmap]
rs6921325	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6922502	0.85[ASN][1000 genomes]
rs6923916	0.85[ASN][1000 genomes]
rs6937815	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6938427	0.88[ASN][1000 genomes]
rs6942368	0.88[ASN][1000 genomes]
rs73776207	0.82[ASN][1000 genomes]
rs7450274	0.84[ASN][1000 genomes]
rs7743007	0.84[ASN][1000 genomes]
rs7743456	0.84[ASN][1000 genomes]
rs7750935	0.88[ASN][1000 genomes]
rs7754992	0.88[ASN][1000 genomes]
rs7757469	0.88[ASN][1000 genomes]
rs7757641	0.88[ASN][1000 genomes]
rs7761178	0.99[ASN][1000 genomes]
rs7770281	0.85[ASN][1000 genomes]
rs7770326	0.88[ASN][1000 genomes]
rs8180540	0.88[ASN][1000 genomes]
rs9375888	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9375890	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9385605	0.84[ASN][1000 genomes]
rs9388994	0.85[ASN][1000 genomes]
rs9388995	0.88[ASN][1000 genomes]
rs9399023	0.84[ASN][1000 genomes]
rs9399027	0.88[ASN][1000 genomes]
rs9399029	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9402405	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132736800-132764600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:132749000-132754000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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