Variant report

Variant	rs9399056
Chromosome Location	chr6:133618301-133618302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10872404	0.82[EUR][1000 genomes]
rs11154722	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12196330	0.88[ASN][1000 genomes]
rs17062270	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17062277	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1932746	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895960	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60411491	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6926146	0.90[EUR][1000 genomes]
rs73009604	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9375953	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9375954	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9389067	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9402500	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9483568	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133599000-133629000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:133613000-133630600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
4	chr6:133617400-133619800	Weak transcription	Right Atrium	heart
5	chr6:133617600-133620200	Weak transcription	Left Ventricle	heart
6	chr6:133617600-133621600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133618000-133618400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:133618200-133619200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:133618200-133620800	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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