Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10457606	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10872404	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11154722	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11154723	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1336519	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17062270	0.95[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap]
rs2184784	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6569877	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6924629	1.00[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6930942	0.94[EUR][1000 genomes]
rs73009604	0.80[ASN][1000 genomes]
rs9373052	0.80[CEU][hapmap]
rs9375953	0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs9375954	0.86[ASN][1000 genomes]
rs9375956	0.91[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9389067	0.94[ASN][1000 genomes]
rs9399056	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399059	1.00[CEU][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9402500	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs9483575	0.94[EUR][1000 genomes]
rs950374	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1932746	L3MBTL3	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133630600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
3	chr6:133623200-133636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133627000-133633200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:133627400-133633200	Weak transcription	Psoas Muscle	Psoas
6	chr6:133627600-133637000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:133628200-133629800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:133628400-133630400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:133628800-133630600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:133629000-133630600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:133629400-133639600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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