Variant report

Variant	rs10457606
Chromosome Location	chr6:133662832-133662833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133608197..133610275-chr6:133661303..133663477,2	MCF-7	breast:
2	chr6:133608130..133609733-chr6:133662657..133665396,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10872404	0.85[EUR][1000 genomes]
rs11154722	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11154723	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1336519	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1932746	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs211629	0.82[ASN][1000 genomes]
rs212826	0.81[ASN][1000 genomes]
rs2184783	0.82[ASN][1000 genomes]
rs2184784	0.84[EUR][1000 genomes]
rs6569877	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6924629	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6930942	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7750244	0.82[ASN][1000 genomes]
rs9375956	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9389074	0.82[ASN][1000 genomes]
rs9399059	0.87[EUR][1000 genomes]
rs9402504	0.82[ASN][1000 genomes]
rs9483575	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs950374	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133659000-133663000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:133660400-133664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:133661200-133663400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:133661200-133663400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:133661400-133663400	Enhancers	Osteobl	bone
7	chr6:133661400-133663600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:133661400-133663800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:133661600-133663400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:133661600-133663400	Flanking Active TSS	A549	lung
11	chr6:133661600-133663600	Enhancers	NH-A	brain
12	chr6:133661800-133663200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:133662000-133663000	Weak transcription	Gastric	stomach
14	chr6:133662000-133663200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
16	chr6:133662400-133663200	Weak transcription	HMEC	breast
17	chr6:133662400-133664600	Enhancers	Hela-S3	cervix
18	chr6:133662800-133663400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:133662800-133663400	Enhancers	Fetal Intestine Large	intestine
20	chr6:133662800-133663400	Enhancers	Pancreatic Islets	Pancreatic Islet

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