Variant report

Variant	rs1336519
Chromosome Location	chr6:133656548-133656549
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10457606	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10872404	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11154722	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11154723	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1932746	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2184784	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6569877	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6924629	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6930942	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9375956	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9389067	0.80[ASN][1000 genomes]
rs9399059	0.94[EUR][1000 genomes]
rs9483575	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs950374	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133654600-133660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133655600-133658200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:133655600-133660000	Weak transcription	Psoas Muscle	Psoas
6	chr6:133655800-133657400	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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