Variant report

Variant	rs11154723
Chromosome Location	chr6:133661186-133661187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10457606	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10872404	0.89[EUR][1000 genomes]
rs11154722	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1336519	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1932746	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2184784	0.88[EUR][1000 genomes]
rs6569877	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6924629	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6930942	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9375956	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9399059	0.91[EUR][1000 genomes]
rs9483575	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs950374	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133658400-133662800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:133659000-133661200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:133659000-133661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:133659000-133663000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:133660000-133661600	Enhancers	A549	lung
7	chr6:133660000-133662000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:133660000-133662200	Enhancers	Psoas Muscle	Psoas
9	chr6:133660400-133661400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:133660400-133664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:133660800-133661200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:133660800-133661200	Flanking Active TSS	Hela-S3	cervix
13	chr6:133660800-133662400	Enhancers	HMEC	breast
14	chr6:133661000-133661400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:133661000-133661400	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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