Variant report

Variant	rs9389074
Chromosome Location	chr6:133677340-133677341
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10457606	0.82[ASN][1000 genomes]
rs1414980	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs1414981	0.83[EUR][1000 genomes]
rs211629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs212826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2184783	1.00[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569878	0.94[CEU][hapmap]
rs6900552	1.00[CEU][hapmap]
rs7750244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373052	0.83[JPT][hapmap]
rs9375956	0.86[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9375959	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs9402504	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402506	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs9402508	0.83[JPT][hapmap]
rs9493613	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs9493614	0.81[CEU][hapmap];0.82[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9389074	AKAP7	cis	parietal	SCAN
rs9389074	VAC14	trans	parietal	SCAN
rs9389074	C6orf192	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
2	chr6:133668000-133679200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:133669000-133678600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133673600-133687600	Weak transcription	Hela-S3	cervix
5	chr6:133674000-133689800	Weak transcription	A549	lung
6	chr6:133674600-133679800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:133675200-133678800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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