Variant report

Variant	rs211629
Chromosome Location	chr6:133687403-133687404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10457606	0.82[ASN][1000 genomes]
rs1414980	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs212826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2184783	0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6569878	0.94[CEU][hapmap]
rs6900552	1.00[CEU][hapmap]
rs7750244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373052	0.83[JPT][hapmap]
rs9375956	0.86[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs9375959	0.94[CEU][hapmap];0.80[EUR][1000 genomes]
rs9389074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402504	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9402506	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs9402508	0.83[JPT][hapmap]
rs9493613	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs9493614	0.81[CEU][hapmap];0.82[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs211629	VAC14	trans	parietal	SCAN
rs211629	AKAP7	cis	parietal	SCAN
rs211629	C6orf192	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133673600-133687600	Weak transcription	Hela-S3	cervix
2	chr6:133674000-133689800	Weak transcription	A549	lung
3	chr6:133684400-133688200	Weak transcription	Psoas Muscle	Psoas
4	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133686000-133688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:133687200-133687800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:133687200-133688400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:133687400-133688000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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