Variant report

Variant	rs9401381
Chromosome Location	chr6:121535995-121535996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11153997	0.91[AFR][1000 genomes]
rs12664050	0.91[AFR][1000 genomes]
rs2389414	0.91[ASN][1000 genomes]
rs2389415	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34448375	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9320809	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9372648	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375002	0.91[AFR][1000 genomes]
rs9375018	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9387937	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387940	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9387947	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9398632	0.83[EUR][1000 genomes]
rs9401370	0.80[AFR][1000 genomes]
rs9482123	0.91[ASN][1000 genomes]
rs9490138	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:121509600-121575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:121515600-121544200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:121516000-121560200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:121526800-121537400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:121528400-121551800	Weak transcription	Psoas Muscle	Psoas
7	chr6:121532000-121539200	Weak transcription	Fetal Kidney	kidney
8	chr6:121532400-121536000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:121532800-121540000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:121533000-121566800	Weak transcription	Stomach Mucosa	stomach
11	chr6:121534400-121536200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:121534800-121538800	ZNF genes & repeats	Dnd41	blood
13	chr6:121535000-121537400	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr6:121535000-121537400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:121535000-121569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:121535400-121536200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr6:121535400-121536200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
18	chr6:121535400-121536400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:121535400-121536400	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr6:121535400-121536400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:121535400-121536400	ZNF genes & repeats	Brain Angular Gyrus	brain
22	chr6:121535400-121536400	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr6:121535400-121536400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:121535400-121536600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:121535400-121536600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:121535400-121536600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:121535400-121536600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:121535400-121536600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:121535400-121536600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:121535400-121536600	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr6:121535400-121536600	ZNF genes & repeats	Aorta	Aorta
32	chr6:121535400-121536600	ZNF genes & repeats	Liver	Liver
33	chr6:121535400-121536600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
34	chr6:121535400-121536600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
35	chr6:121535400-121536600	ZNF genes & repeats	Esophagus	oesophagus
36	chr6:121535400-121536600	ZNF genes & repeats	Fetal Intestine Large	intestine
37	chr6:121535400-121536600	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr6:121535400-121536600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
39	chr6:121535400-121536600	ZNF genes & repeats	Fetal Muscle Leg	muscle
40	chr6:121535400-121536600	ZNF genes & repeats	Gastric	stomach
41	chr6:121535400-121536600	ZNF genes & repeats	Left Ventricle	heart
42	chr6:121535400-121536600	ZNF genes & repeats	Ovary	ovary
43	chr6:121535400-121536600	ZNF genes & repeats	Pancreas	Pancrea
44	chr6:121535400-121536600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
45	chr6:121535400-121536600	ZNF genes & repeats	Spleen	Spleen
46	chr6:121535400-121536800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:121535400-121536800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr6:121535400-121536800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr6:121535400-121536800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
50	chr6:121535400-121536800	ZNF genes & repeats	Fetal Stomach	stomach

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