Variant report

Variant	rs9375002
Chromosome Location	chr6:121456893-121456894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121449170..121450755-chr6:121455147..121457619,2	MCF-7	breast:
2	chr6:121452531..121454187-chr6:121456361..121459088,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11153997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1891646	0.85[JPT][hapmap]
rs1995313	0.81[JPT][hapmap]
rs2202065	0.84[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs2389414	0.88[CHB][hapmap]
rs2389415	0.94[AFR][1000 genomes]
rs28426974	0.82[EUR][1000 genomes]
rs34448375	0.82[AFR][1000 genomes]
rs4412234	0.87[JPT][hapmap]
rs4461766	0.87[JPT][hapmap]
rs58778079	0.84[EUR][1000 genomes]
rs6926502	0.85[JPT][hapmap]
rs6941235	0.82[JPT][hapmap]
rs7450632	0.85[JPT][hapmap]
rs7768058	0.86[JPT][hapmap]
rs9320801	0.81[JPT][hapmap]
rs9320803	0.93[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs9320806	0.85[JPT][hapmap]
rs9320807	0.90[JPT][hapmap]
rs9320808	0.90[JPT][hapmap]
rs9320809	0.94[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs9372635	0.84[EUR][1000 genomes]
rs9372648	0.94[AFR][1000 genomes]
rs9374999	0.83[EUR][1000 genomes]
rs9375001	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9375018	0.82[AFR][1000 genomes]
rs9375022	0.86[JPT][hapmap]
rs9387915	0.84[EUR][1000 genomes]
rs9387917	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9387924	0.81[JPT][hapmap]
rs9387929	0.86[JPT][hapmap]
rs9387937	1.00[AFR][1000 genomes]
rs9387940	0.94[AFR][1000 genomes]
rs9387942	0.85[JPT][hapmap]
rs9398622	0.81[JPT][hapmap]
rs9398629	0.90[JPT][hapmap]
rs9401367	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9401370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401381	0.91[AFR][1000 genomes]
rs9401384	0.95[JPT][hapmap]
rs9482118	0.83[JPT][hapmap]
rs9482119	0.87[JPT][hapmap]
rs9482123	0.88[CHB][hapmap]
rs9490138	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:121447000-121463200	Weak transcription	Ovary	ovary
3	chr6:121447200-121463000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:121447200-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:121456600-121457000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:121456600-121457000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:121456800-121457200	Enhancers	HUES6 Cell Line	embryonic stem cell

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