Variant report

Variant	rs9320801
Chromosome Location	chr6:121603781-121603782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs11154003	0.83[EUR][1000 genomes]
rs11154014	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12209087	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1343072	0.83[EUR][1000 genomes]
rs1604279	0.82[EUR][1000 genomes]
rs1846865	0.81[AMR][1000 genomes]
rs1891646	0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs1995313	0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2038833	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2102102	0.86[EUR][1000 genomes]
rs2133992	0.94[YRI][hapmap];0.86[EUR][1000 genomes]
rs2202065	0.85[JPT][hapmap]
rs2892766	0.86[EUR][1000 genomes]
rs35583988	0.85[EUR][1000 genomes]
rs35983239	0.80[EUR][1000 genomes]
rs407586	0.95[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap]
rs4395765	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4412234	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4412244	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs443149	0.95[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.80[TSI][hapmap]
rs4461766	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4498397	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4946565	0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6569197	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569200	0.81[AMR][1000 genomes]
rs6903298	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6911380	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6916050	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6919890	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6926502	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs6928060	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6936507	0.82[EUR][1000 genomes]
rs6941235	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7450022	0.95[YRI][hapmap];0.86[EUR][1000 genomes]
rs7450632	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7766150	0.85[GIH][hapmap]
rs7768058	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7771881	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9320793	0.85[EUR][1000 genomes]
rs9320794	0.89[ASW][hapmap];0.85[GIH][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs9320799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320805	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320806	0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9320807	0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9320808	0.94[CHB][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9372645	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9372647	0.82[EUR][1000 genomes]
rs9372652	0.84[AMR][1000 genomes]
rs9375002	0.81[JPT][hapmap]
rs9375008	0.82[EUR][1000 genomes]
rs9375009	0.83[EUR][1000 genomes]
rs9375011	0.85[GIH][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs9375012	0.95[YRI][hapmap];0.86[EUR][1000 genomes]
rs9375013	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9375019	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9375021	0.81[AMR][1000 genomes]
rs9375022	0.89[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9385193	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9387920	0.89[JPT][hapmap]
rs9387924	0.89[JPT][hapmap];0.87[MEX][hapmap]
rs9387926	0.83[EUR][1000 genomes]
rs9387928	0.82[EUR][1000 genomes]
rs9387929	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9387930	0.86[EUR][1000 genomes]
rs9387939	0.94[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9387942	0.89[CHB][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9398622	0.89[JPT][hapmap];0.91[MEX][hapmap]
rs9398623	0.90[ASW][hapmap];0.85[GIH][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs9398625	0.95[YRI][hapmap];0.86[EUR][1000 genomes]
rs9398629	0.81[JPT][hapmap]
rs9398631	0.98[MKK][hapmap];0.80[TSI][hapmap]
rs9401367	1.00[JPT][hapmap]
rs9401370	0.85[JPT][hapmap]
rs9401375	0.85[EUR][1000 genomes]
rs9401376	0.82[EUR][1000 genomes]
rs9401377	0.83[EUR][1000 genomes]
rs9401378	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9401379	0.81[EUR][1000 genomes]
rs9401380	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9401382	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9401384	0.85[JPT][hapmap]
rs9401387	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9401388	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9482118	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9482119	0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs9490184	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs976611	0.89[JPT][hapmap]
rs9885676	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1017944	chr6:121600538-121644362	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121575000-121606400	Weak transcription	NH-A	brain
2	chr6:121585400-121614200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:121585600-121625000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:121586600-121613000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:121588200-121616800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:121588400-121655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:121588600-121612000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:121588600-121617600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:121588800-121604000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:121588800-121642000	Weak transcription	Left Ventricle	heart
12	chr6:121589000-121632800	Weak transcription	Fetal Lung	lung
13	chr6:121589000-121635200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:121589000-121637600	Weak transcription	Ovary	ovary
15	chr6:121589000-121654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:121589200-121605200	Weak transcription	Dnd41	blood
17	chr6:121589200-121622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:121589200-121630000	Weak transcription	Fetal Intestine Large	intestine
19	chr6:121589200-121631800	Weak transcription	Fetal Intestine Small	intestine
20	chr6:121589200-121655000	Weak transcription	Fetal Stomach	stomach
21	chr6:121589400-121612400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:121589600-121615600	Weak transcription	Fetal Brain Female	brain
23	chr6:121590200-121630800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:121593800-121605800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:121594000-121606200	Weak transcription	NHLF	lung
26	chr6:121594200-121654800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:121594600-121622400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:121595400-121616600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:121596000-121605400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:121596600-121605200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:121597600-121617200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:121598000-121622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:121598200-121612200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:121599400-121612800	Weak transcription	Brain Substantia Nigra	brain
35	chr6:121600400-121603800	Weak transcription	Primary B cells from cord blood	blood
36	chr6:121600600-121604000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:121601600-121635200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:121602400-121606400	Weak transcription	HSMM	muscle
39	chr6:121602600-121637800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:121603000-121632600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:121603400-121604800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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