Variant report

Variant	rs7771881
Chromosome Location	chr6:121501214-121501215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121495458..121497370-chr6:121499505..121502108,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10457412	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11154003	0.80[EUR][1000 genomes]
rs12205580	0.89[EUR][1000 genomes]
rs1273724	0.83[AMR][1000 genomes]
rs1273728	0.83[AMR][1000 genomes]
rs1273746	0.83[AMR][1000 genomes]
rs1343072	0.80[EUR][1000 genomes]
rs1392863	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1604278	0.84[EUR][1000 genomes]
rs1604279	0.81[EUR][1000 genomes]
rs1776817	0.84[EUR][1000 genomes]
rs1827299	0.83[EUR][1000 genomes]
rs1846865	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1846866	0.85[EUR][1000 genomes]
rs1891646	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1995313	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2088832	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs218867	0.81[AMR][1000 genomes]
rs2202066	0.86[EUR][1000 genomes]
rs391331	0.83[AMR][1000 genomes]
rs3956400	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4027128	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs407586	0.83[AMR][1000 genomes]
rs4321860	0.86[EUR][1000 genomes]
rs4412234	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs443149	0.83[AMR][1000 genomes]
rs4476866	0.89[EUR][1000 genomes]
rs4498397	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4601176	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946547	0.90[EUR][1000 genomes]
rs59805136	0.82[AMR][1000 genomes]
rs624687	0.82[EUR][1000 genomes]
rs6569174	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6916050	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6919890	0.81[AMR][1000 genomes]
rs6926502	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6928060	0.81[AMR][1000 genomes]
rs6936507	0.81[EUR][1000 genomes]
rs6941235	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7450632	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7768058	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs785395	0.83[AMR][1000 genomes]
rs905025	0.89[EUR][1000 genomes]
rs9320791	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9320799	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9320801	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9320805	0.81[ASN][1000 genomes]
rs9372640	0.88[EUR][1000 genomes]
rs9372641	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9372643	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9372644	0.84[EUR][1000 genomes]
rs9372645	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372647	0.81[EUR][1000 genomes]
rs9375004	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9375007	0.85[EUR][1000 genomes]
rs9375008	0.81[EUR][1000 genomes]
rs9375009	0.80[EUR][1000 genomes]
rs9375011	0.81[EUR][1000 genomes]
rs9375013	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385187	0.85[EUR][1000 genomes]
rs9385193	0.82[AMR][1000 genomes]
rs9387920	0.83[AMR][1000 genomes]
rs9387922	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9387924	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9387926	0.80[EUR][1000 genomes]
rs9387929	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9387939	0.81[AMR][1000 genomes]
rs9398622	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9401368	0.83[AMR][1000 genomes]
rs9401372	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9401373	0.89[EUR][1000 genomes]
rs9401374	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9401376	0.81[EUR][1000 genomes]
rs9401377	0.80[EUR][1000 genomes]
rs9401378	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401379	0.82[EUR][1000 genomes]
rs9401380	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9401382	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9482118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9482119	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs976611	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121474600-121508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121475600-121508600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:121478800-121535400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:121479000-121505000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:121479200-121502600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:121479600-121501400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:121480200-121502400	Weak transcription	Left Ventricle	heart
8	chr6:121480200-121504600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:121480200-121535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:121480400-121505400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:121480600-121502200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:121480800-121535400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:121481000-121502600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:121481000-121535400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:121494600-121516600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:121495200-121502200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:121495200-121529400	Weak transcription	Primary B cells from cord blood	blood
19	chr6:121496400-121516600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:121496800-121535400	Weak transcription	Fetal Lung	lung
21	chr6:121498000-121502600	Weak transcription	Fetal Brain Male	brain
22	chr6:121498000-121518000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:121498400-121504400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:121498600-121502400	Weak transcription	Fetal Stomach	stomach
25	chr6:121498600-121535400	Weak transcription	Pancreas	Pancrea
26	chr6:121499000-121516000	Weak transcription	Aorta	Aorta
27	chr6:121499200-121509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:121499600-121503000	Weak transcription	Brain Angular Gyrus	brain
29	chr6:121499800-121502200	Weak transcription	GM12878-XiMat	blood
30	chr6:121499800-121535800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:121500000-121504800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr6:121500000-121529000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:121500200-121501600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:121500200-121502200	Weak transcription	Primary T cells from cord blood	blood
35	chr6:121500200-121502400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:121500200-121502400	Weak transcription	Dnd41	blood
37	chr6:121500200-121513800	Weak transcription	Ovary	ovary
38	chr6:121500400-121505800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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