Variant report

Variant	rs6569174
Chromosome Location	chr6:121471774-121471775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10457412	0.95[AFR][1000 genomes]
rs11154003	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11965633	0.86[AMR][1000 genomes]
rs12205580	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12524806	0.87[AMR][1000 genomes]
rs12525761	0.87[AMR][1000 genomes]
rs12526242	0.87[AMR][1000 genomes]
rs12527636	0.87[AMR][1000 genomes]
rs12527842	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12527994	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12528443	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12529782	0.88[AMR][1000 genomes]
rs1273706	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1273718	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1273720	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1273731	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1273732	0.83[AMR][1000 genomes]
rs1273738	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1273742	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1273743	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1343072	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1392863	0.95[AFR][1000 genomes]
rs1604278	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604279	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17083187	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1776817	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1827299	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1846866	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935940	0.80[EUR][1000 genomes]
rs2102102	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2133992	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2202066	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203588	0.87[AMR][1000 genomes]
rs2203589	0.87[AMR][1000 genomes]
rs2358137	0.86[AMR][1000 genomes]
rs2892766	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35583988	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35983239	0.84[AMR][1000 genomes]
rs4027128	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4321860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4476866	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4601176	0.92[AFR][1000 genomes]
rs4946547	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60378317	0.87[AMR][1000 genomes]
rs6921681	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6931402	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6936507	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73536420	0.87[AMR][1000 genomes]
rs73536422	0.87[AMR][1000 genomes]
rs73536428	0.86[AMR][1000 genomes]
rs73536481	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73536482	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7450022	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7748115	0.87[AMR][1000 genomes]
rs7751291	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7756848	0.88[AMR][1000 genomes]
rs7769564	0.86[AMR][1000 genomes]
rs7769807	0.87[AMR][1000 genomes]
rs7771881	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs785399	0.90[AMR][1000 genomes]
rs884045	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs905024	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs905025	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs924528	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9320791	0.92[AFR][1000 genomes]
rs9320793	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9320794	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9372640	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9372641	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372642	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9372643	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372644	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9372647	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9375007	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375008	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375009	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9375011	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9375012	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9385187	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9387922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387926	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9387928	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9387930	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9398622	0.92[AFR][1000 genomes]
rs9398623	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9398625	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9401372	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9401373	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401374	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401375	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9401376	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401377	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9401379	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9482118	0.81[AFR][1000 genomes]
rs953616	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs976611	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:121463600-121474200	Weak transcription	Ovary	ovary
7	chr6:121463600-121476800	Weak transcription	Gastric	stomach
8	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
9	chr6:121464200-121473200	Weak transcription	Dnd41	blood
10	chr6:121465400-121474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:121465600-121473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:121469400-121477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:121470000-121474200	Weak transcription	Fetal Stomach	stomach
14	chr6:121470000-121474400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:121471200-121474000	Weak transcription	Brain Cingulate Gyrus	brain

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