Variant report

Variant	rs976611
Chromosome Location	chr6:121458944-121458945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121452531..121454187-chr6:121456361..121459088,2	K562	blood:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10457412	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11154014	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs12526242	0.86[CEU][hapmap]
rs12527842	0.81[EUR][1000 genomes]
rs12527994	0.81[EUR][1000 genomes]
rs12528443	0.81[EUR][1000 genomes]
rs1273706	0.81[EUR][1000 genomes]
rs1273718	0.80[EUR][1000 genomes]
rs1273720	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs1273724	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1273728	1.00[CEU][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1273731	0.81[EUR][1000 genomes]
rs1273732	0.86[CEU][hapmap]
rs1273738	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs1273742	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1273743	0.81[EUR][1000 genomes]
rs1273746	1.00[CEU][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1290678	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1392863	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604278	0.81[AFR][1000 genomes]
rs17083187	0.81[EUR][1000 genomes]
rs1846865	0.84[AMR][1000 genomes]
rs1846866	0.88[YRI][hapmap]
rs1891646	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes]
rs1995313	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes]
rs218867	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2202065	0.82[JPT][hapmap]
rs2202066	0.81[AFR][1000 genomes]
rs391331	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3956400	0.82[AMR][1000 genomes]
rs4027128	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs407586	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4321860	0.81[AFR][1000 genomes]
rs4412234	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs443149	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4461766	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs4498397	0.86[CEU][hapmap]
rs450762	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4601176	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4946535	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4946547	0.88[YRI][hapmap]
rs4946562	0.86[CEU][hapmap]
rs59805136	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs624687	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569174	0.84[AFR][1000 genomes]
rs6916050	0.84[AMR][1000 genomes]
rs6921681	0.81[EUR][1000 genomes]
rs6926502	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes]
rs6931402	0.81[EUR][1000 genomes]
rs6941235	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs73536481	0.81[EUR][1000 genomes]
rs73536482	0.81[EUR][1000 genomes]
rs7450632	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs7751291	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7764420	0.85[ASN][1000 genomes]
rs7768058	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs7771881	0.86[AMR][1000 genomes]
rs785395	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs884045	0.81[EUR][1000 genomes]
rs9320791	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320801	0.89[JPT][hapmap]
rs9320806	0.93[CEU][hapmap];0.85[JPT][hapmap]
rs9320807	0.86[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs9320808	0.93[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs9372641	0.81[AFR][1000 genomes]
rs9375004	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375006	0.80[YRI][hapmap]
rs9375022	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs9387920	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387922	0.84[AFR][1000 genomes]
rs9387924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387929	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs9387939	0.84[CEU][hapmap];0.84[CHB][hapmap]
rs9387942	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs9398622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9398629	0.81[JPT][hapmap]
rs9398631	0.85[CEU][hapmap]
rs9401367	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs9401368	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401370	0.82[JPT][hapmap]
rs9401372	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9401380	0.84[AMR][1000 genomes]
rs9401382	0.82[AMR][1000 genomes]
rs9401384	0.85[JPT][hapmap]
rs9482118	0.86[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs9482119	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]
rs953616	0.86[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv966656	chr6:121458378-121463465	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:121447000-121463200	Weak transcription	Ovary	ovary
3	chr6:121447200-121463000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:121447200-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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