Variant report

Variant	rs9387929
Chromosome Location	chr6:121535686-121535687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10457412	0.86[AMR][1000 genomes]
rs11154014	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12209087	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12526242	0.85[CEU][hapmap]
rs1273720	0.84[CEU][hapmap]
rs1273724	0.81[AMR][1000 genomes]
rs1273725	0.84[CEU][hapmap]
rs1273726	0.83[CEU][hapmap]
rs1273728	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes]
rs1273732	0.85[CEU][hapmap]
rs1273738	0.84[CEU][hapmap]
rs1273742	0.85[CEU][hapmap]
rs1273746	1.00[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes]
rs1290678	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1392863	0.87[AMR][1000 genomes]
rs1846865	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1891646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1995313	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2038833	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2088832	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs218867	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2202065	0.90[JPT][hapmap]
rs391331	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3956400	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4027128	0.85[AMR][1000 genomes]
rs407586	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4395765	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4412234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4412244	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs443149	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4461766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4498397	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs450762	0.84[AMR][1000 genomes]
rs4601176	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4946562	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4946565	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59805136	0.80[AMR][1000 genomes]
rs624687	0.90[AMR][1000 genomes]
rs6569178	0.85[JPT][hapmap]
rs6569197	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6569200	0.88[EUR][1000 genomes]
rs6903298	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6911380	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6916050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6919890	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6926502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6928060	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6941235	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7450632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751291	0.85[CEU][hapmap]
rs7768058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7771881	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs785395	0.81[AMR][1000 genomes]
rs9320791	0.87[AMR][1000 genomes]
rs9320799	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9320801	0.86[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9320805	0.82[ASN][1000 genomes]
rs9320806	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9320807	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9320808	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9372645	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9372652	0.80[AMR][1000 genomes]
rs9375002	0.86[JPT][hapmap]
rs9375004	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9375013	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9375019	0.84[AMR][1000 genomes]
rs9375021	0.82[EUR][1000 genomes]
rs9375022	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9385193	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9387920	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9387924	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9387930	0.81[AFR][1000 genomes]
rs9387939	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9387942	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9398622	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes]
rs9398629	0.85[JPT][hapmap]
rs9398631	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs9401367	0.90[JPT][hapmap]
rs9401368	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9401370	0.91[JPT][hapmap]
rs9401372	0.85[AMR][1000 genomes]
rs9401375	0.85[CEU][hapmap]
rs9401378	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9401380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9401382	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9401384	0.90[JPT][hapmap]
rs9401387	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9482118	0.93[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9482119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs953616	0.85[CEU][hapmap]
rs976611	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:121499800-121535800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:121509600-121575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:121515000-121535800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:121515600-121544200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:121516000-121560200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:121526800-121537400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:121528400-121551800	Weak transcription	Psoas Muscle	Psoas
9	chr6:121528800-121535800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:121532000-121539200	Weak transcription	Fetal Kidney	kidney
11	chr6:121532400-121536000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:121532800-121540000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:121533000-121566800	Weak transcription	Stomach Mucosa	stomach
14	chr6:121534400-121536200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:121534800-121538800	ZNF genes & repeats	Dnd41	blood
16	chr6:121535000-121537400	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr6:121535000-121537400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:121535000-121569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:121535400-121535800	Strong transcription	Fetal Lung	lung
20	chr6:121535400-121536200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr6:121535400-121536200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
22	chr6:121535400-121536400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:121535400-121536400	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr6:121535400-121536400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:121535400-121536400	ZNF genes & repeats	Brain Angular Gyrus	brain
26	chr6:121535400-121536400	ZNF genes & repeats	Brain Germinal Matrix	brain
27	chr6:121535400-121536400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:121535400-121536600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:121535400-121536600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:121535400-121536600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:121535400-121536600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:121535400-121536600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:121535400-121536600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:121535400-121536600	ZNF genes & repeats	Adipose Nuclei	Adipose
35	chr6:121535400-121536600	ZNF genes & repeats	Aorta	Aorta
36	chr6:121535400-121536600	ZNF genes & repeats	Liver	Liver
37	chr6:121535400-121536600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
38	chr6:121535400-121536600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
39	chr6:121535400-121536600	ZNF genes & repeats	Esophagus	oesophagus
40	chr6:121535400-121536600	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr6:121535400-121536600	ZNF genes & repeats	Fetal Intestine Small	intestine
42	chr6:121535400-121536600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr6:121535400-121536600	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr6:121535400-121536600	ZNF genes & repeats	Gastric	stomach
45	chr6:121535400-121536600	ZNF genes & repeats	Left Ventricle	heart
46	chr6:121535400-121536600	ZNF genes & repeats	Ovary	ovary
47	chr6:121535400-121536600	ZNF genes & repeats	Pancreas	Pancrea
48	chr6:121535400-121536600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
49	chr6:121535400-121536600	ZNF genes & repeats	Spleen	Spleen
50	chr6:121535400-121536800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links