Variant report

Variant	rs9375019
Chromosome Location	chr6:121607477-121607478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11154014	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs12209087	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1846865	0.84[AMR][1000 genomes]
rs1891646	0.83[AMR][1000 genomes]
rs1995313	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2038833	0.83[ASN][1000 genomes]
rs391331	0.82[AMR][1000 genomes]
rs3956400	0.82[AMR][1000 genomes]
rs407586	0.82[AMR][1000 genomes]
rs4395765	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4412234	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4412244	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs443149	0.82[AMR][1000 genomes]
rs4461766	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4946565	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6569197	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6569200	0.84[AMR][1000 genomes]
rs6903298	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6911380	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6916050	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6919890	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6926502	0.83[AMR][1000 genomes]
rs6928060	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6941235	0.82[AMR][1000 genomes]
rs7450632	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7768058	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9320799	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9320801	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9320805	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9320806	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9320807	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9320808	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9372652	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9375004	0.82[AMR][1000 genomes]
rs9375021	0.84[AMR][1000 genomes]
rs9375022	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9385193	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9387920	0.82[AMR][1000 genomes]
rs9387929	0.84[AMR][1000 genomes]
rs9387939	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9387942	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9401368	0.82[AMR][1000 genomes]
rs9401380	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9401382	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9401387	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9401388	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9482119	0.84[AMR][1000 genomes]
rs9885676	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1017944	chr6:121600538-121644362	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121585400-121614200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:121585600-121625000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:121586600-121613000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:121588200-121616800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:121588400-121655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:121588600-121612000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:121588600-121617600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:121588800-121642000	Weak transcription	Left Ventricle	heart
10	chr6:121589000-121632800	Weak transcription	Fetal Lung	lung
11	chr6:121589000-121635200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:121589000-121637600	Weak transcription	Ovary	ovary
13	chr6:121589000-121654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:121589200-121622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:121589200-121630000	Weak transcription	Fetal Intestine Large	intestine
16	chr6:121589200-121631800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:121589200-121655000	Weak transcription	Fetal Stomach	stomach
18	chr6:121589400-121612400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:121589600-121615600	Weak transcription	Fetal Brain Female	brain
20	chr6:121590200-121630800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:121594200-121654800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:121594600-121622400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:121595400-121616600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:121597600-121617200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:121598000-121622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:121598200-121612200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:121599400-121612800	Weak transcription	Brain Substantia Nigra	brain
28	chr6:121601600-121635200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:121602600-121637800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:121603000-121632600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:121604000-121645200	Weak transcription	Fetal Kidney	kidney
32	chr6:121604400-121642000	Weak transcription	Primary B cells from cord blood	blood
33	chr6:121604800-121612000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:121604800-121653000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:121605400-121615600	Weak transcription	Esophagus	oesophagus
36	chr6:121605800-121610800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:121606600-121612400	Weak transcription	Dnd41	blood
38	chr6:121606600-121655000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:121606800-121612400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:121606800-121612600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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