Variant report
| Variant | rs9885676 |
|---|---|
| Chromosome Location | chr6:121667201-121667202 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12209087 | 0.86[ASN][1000 genomes] |
| rs2038833 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4395765 | 0.86[ASN][1000 genomes] |
| rs4412244 | 0.86[ASN][1000 genomes] |
| rs4461766 | 0.87[ASN][1000 genomes] |
| rs4498397 | 0.86[ASN][1000 genomes] |
| rs4946565 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6569197 | 0.86[ASN][1000 genomes] |
| rs6903298 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6911380 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6919890 | 0.84[ASN][1000 genomes] |
| rs6928060 | 0.83[ASN][1000 genomes] |
| rs6941235 | 0.86[ASN][1000 genomes] |
| rs9320799 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9320801 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9320805 | 0.94[ASN][1000 genomes] |
| rs9320806 | 0.86[ASN][1000 genomes] |
| rs9320807 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9320808 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9375013 | 0.81[ASN][1000 genomes] |
| rs9375019 | 0.82[ASN][1000 genomes] |
| rs9375022 | 0.86[ASN][1000 genomes] |
| rs9385193 | 0.84[ASN][1000 genomes] |
| rs9387939 | 0.83[ASN][1000 genomes] |
| rs9387942 | 0.87[ASN][1000 genomes] |
| rs9401387 | 0.86[ASN][1000 genomes] |
| rs9401388 | 0.89[ASN][1000 genomes] |
| rs9490184 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023384 | chr6:121235867-121683448 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv530527 | chr6:121298528-121789855 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv830789 | chr6:121581450-121732320 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv970057 | chr6:121663325-121679145 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:121666800-121668400 | Weak transcription | Fetal Intestine Small | intestine |
