Variant report

Variant	rs2038833
Chromosome Location	chr6:121673627-121673628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11154014	0.85[CEU][hapmap]
rs12209087	0.87[ASN][1000 genomes]
rs1891646	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1995313	0.94[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs2202065	0.86[JPT][hapmap]
rs4395765	0.87[ASN][1000 genomes]
rs4412234	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs4412244	0.87[ASN][1000 genomes]
rs4461766	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4498397	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4946565	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6569197	0.87[ASN][1000 genomes]
rs6903298	0.91[ASN][1000 genomes]
rs6911380	0.89[ASN][1000 genomes]
rs6919890	0.86[ASN][1000 genomes]
rs6926502	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6928060	0.84[ASN][1000 genomes]
rs6941235	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7450632	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7768058	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs9320799	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9320801	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9320805	0.96[ASN][1000 genomes]
rs9320806	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9320807	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs9320808	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs9375013	0.83[ASN][1000 genomes]
rs9375019	0.83[ASN][1000 genomes]
rs9375022	0.85[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9385193	0.86[ASN][1000 genomes]
rs9387924	0.84[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs9387929	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs9387939	0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9387942	0.84[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs9398629	0.80[JPT][hapmap]
rs9401382	0.80[ASN][1000 genomes]
rs9401384	0.85[JPT][hapmap]
rs9401387	0.87[ASN][1000 genomes]
rs9401388	0.91[ASN][1000 genomes]
rs9482118	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9482119	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs9490184	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9885676	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970057	chr6:121663325-121679145	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv519021	chr6:121671944-121677165	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121673200-121673800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:121673200-121674000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:121673600-121674000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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