Variant report

Variant	rs1273725
Chromosome Location	chr6:121445349-121445350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10499105	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs11153995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12524367	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524843	0.86[ASN][1000 genomes]
rs12526242	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs12529234	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529394	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529782	0.81[ASN][1000 genomes]
rs1273707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273713	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1273715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273718	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs1273719	0.85[CHB][hapmap];0.82[YRI][hapmap]
rs1273720	0.90[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273722	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273726	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273732	0.91[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs1273733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273734	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273736	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1273737	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273738	1.00[CEU][hapmap]
rs1273741	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273742	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs1273743	0.82[ASN][1000 genomes]
rs1273745	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273755	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273756	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1298045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314808	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314809	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17083165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083177	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083183	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083186	0.85[CHB][hapmap]
rs17083190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17083373	0.85[CHB][hapmap]
rs17083393	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs17083415	0.85[CHB][hapmap]
rs17154	0.85[CHB][hapmap]
rs1776817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846866	1.00[CEU][hapmap]
rs1935940	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2133992	1.00[CEU][hapmap]
rs2133994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2358136	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2455056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2651526	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797955	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892765	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2995680	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102641	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4072142	0.85[CHB][hapmap]
rs4371872	0.85[CHB][hapmap]
rs4476866	1.00[CEU][hapmap]
rs4498397	0.83[CEU][hapmap]
rs4527742	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4585603	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4946537	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4946540	1.00[GIH][hapmap];0.90[MEX][hapmap]
rs4946547	1.00[CEU][hapmap]
rs4946562	0.91[CEU][hapmap]
rs56721703	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822960	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59919987	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6569179	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6569194	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6903467	0.85[CHB][hapmap]
rs6905696	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905992	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6933489	1.00[GIH][hapmap];0.95[MEX][hapmap]
rs6939178	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941235	0.84[CEU][hapmap]
rs73536406	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536417	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536430	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536471	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536481	0.81[ASN][1000 genomes]
rs73536482	0.81[ASN][1000 genomes]
rs7450022	1.00[CEU][hapmap]
rs7451033	0.85[CHB][hapmap]
rs767743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741356	0.85[CHB][hapmap]
rs7742071	0.85[CHB][hapmap]
rs7749984	0.85[CHB][hapmap]
rs7751291	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[ASN][1000 genomes]
rs7765795	0.82[CHB][hapmap]
rs7768927	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771625	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772236	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811484	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs813068	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs905023	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs905024	1.00[CEU][hapmap]
rs905025	1.00[CEU][hapmap]
rs9320793	1.00[CEU][hapmap]
rs9320794	1.00[CEU][hapmap]
rs9372640	1.00[CEU][hapmap]
rs9372646	1.00[CEU][hapmap]
rs9375011	1.00[CEU][hapmap]
rs9375012	1.00[CEU][hapmap]
rs9385187	1.00[CEU][hapmap]
rs9387929	0.84[CEU][hapmap]
rs9398623	1.00[CEU][hapmap]
rs9398625	1.00[CEU][hapmap]
rs9398631	0.91[CEU][hapmap]
rs9401374	1.00[CEU][hapmap]
rs9401375	1.00[CEU][hapmap]
rs9401379	1.00[CEU][hapmap]
rs9482118	0.84[CEU][hapmap]
rs953616	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs975679	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121418600-121446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121419800-121446200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
4	chr6:121433800-121446200	Weak transcription	Pancreas	Pancrea
5	chr6:121436400-121445600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:121436600-121445400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:121438400-121446200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:121441200-121446200	Weak transcription	HSMM	muscle
9	chr6:121441800-121447600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:121442000-121446200	Weak transcription	Adipose Nuclei	Adipose
11	chr6:121442000-121446400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:121442000-121447600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:121442400-121446200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:121442600-121446200	Weak transcription	Esophagus	oesophagus
15	chr6:121442600-121446200	Weak transcription	Placenta	Placenta
16	chr6:121443000-121446200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:121443400-121447800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:121443800-121447200	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr6:121444000-121445600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:121444000-121445600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:121444000-121447200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr6:121444000-121447200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:121444000-121448200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:121444200-121446200	Weak transcription	Left Ventricle	heart
25	chr6:121444200-121446200	Weak transcription	Ovary	ovary
26	chr6:121444400-121446800	Weak transcription	Fetal Heart	heart
27	chr6:121444600-121446200	Weak transcription	Primary B cells from cord blood	blood
28	chr6:121444600-121446200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:121444600-121446200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:121444600-121446200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:121444600-121446200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:121444600-121446800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:121444800-121445600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:121444800-121446200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:121445000-121445400	Weak transcription	Fetal Lung	lung
36	chr6:121445000-121445800	Weak transcription	Right Ventricle	heart
37	chr6:121445000-121446200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:121445000-121447600	ZNF genes & repeats	Primary T cells from cord blood	blood
39	chr6:121445200-121445400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr6:121445200-121446400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:121445200-121446600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr6:121445200-121447000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
43	chr6:121445200-121447200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:121445200-121447200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:121445200-121447600	ZNF genes & repeats	Dnd41	blood

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