Variant report

Variant	rs1273719
Chromosome Location	chr6:121442168-121442169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10428866	1.00[CEU][hapmap]
rs11153995	0.85[CHB][hapmap]
rs12524367	0.81[AFR][1000 genomes]
rs12524843	0.82[ASN][1000 genomes]
rs1273713	0.96[AFR][1000 genomes]
rs1273715	0.85[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs1273721	0.85[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1273722	0.85[CHB][hapmap];0.82[YRI][hapmap]
rs1273725	0.85[CHB][hapmap];0.82[YRI][hapmap]
rs1273726	0.85[CHB][hapmap]
rs1273733	0.85[CHB][hapmap];0.81[YRI][hapmap]
rs1273734	0.91[AFR][1000 genomes]
rs1273737	0.92[AFR][1000 genomes]
rs1273741	0.92[AFR][1000 genomes]
rs1273745	0.85[CHB][hapmap];0.82[YRI][hapmap]
rs1273748	0.85[CHB][hapmap];0.84[YRI][hapmap]
rs1273755	0.92[AFR][1000 genomes]
rs1273756	0.92[AFR][1000 genomes]
rs1273765	1.00[CEU][hapmap]
rs1314808	0.92[AFR][1000 genomes]
rs1314809	0.92[AFR][1000 genomes]
rs17083139	0.85[CHB][hapmap]
rs17083165	0.85[CHB][hapmap]
rs17083186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083190	0.85[CHB][hapmap]
rs17083373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17083415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776810	1.00[CEU][hapmap]
rs1776817	0.85[CHB][hapmap]
rs2133990	0.94[ASN][1000 genomes]
rs2133991	1.00[CEU][hapmap]
rs2133994	0.85[CHB][hapmap]
rs2455056	0.85[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2651526	0.96[AFR][1000 genomes]
rs2797955	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2892765	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2995680	0.85[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs4072142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4132315	0.94[ASN][1000 genomes]
rs4371872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4610600	1.00[CEU][hapmap]
rs4946563	1.00[CEU][hapmap]
rs55731091	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55799213	0.94[ASN][1000 genomes]
rs55983388	0.94[ASN][1000 genomes]
rs56000113	0.94[ASN][1000 genomes]
rs56721703	0.81[AFR][1000 genomes]
rs56927912	0.94[ASN][1000 genomes]
rs58124381	0.94[ASN][1000 genomes]
rs61047660	0.89[ASN][1000 genomes]
rs61293964	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6569180	1.00[CEU][hapmap]
rs6903467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6920055	0.94[ASN][1000 genomes]
rs6925413	0.94[ASN][1000 genomes]
rs6941079	0.82[ASN][1000 genomes]
rs73526695	0.94[ASN][1000 genomes]
rs73768932	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73768938	0.94[ASN][1000 genomes]
rs7451033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs767743	0.85[CHB][hapmap]
rs7741356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7742071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7744891	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755977	0.94[ASN][1000 genomes]
rs7759798	0.94[ASN][1000 genomes]
rs7765795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767417	0.94[ASN][1000 genomes]
rs7768927	0.80[AFR][1000 genomes]
rs7769067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785400	1.00[CEU][hapmap]
rs785407	1.00[CEU][hapmap]
rs905023	0.85[CHB][hapmap];0.86[YRI][hapmap]
rs9320802	1.00[CEU][hapmap]
rs9387926	1.00[CEU][hapmap]
rs9401378	1.00[CEU][hapmap]
rs9490136	1.00[CEU][hapmap]
rs9490148	0.94[ASN][1000 genomes]
rs9490149	1.00[CEU][hapmap]
rs975679	0.85[CHB][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121390800-121444000	Weak transcription	Ovary	ovary
2	chr6:121403600-121443400	Weak transcription	Left Ventricle	heart
3	chr6:121411800-121443000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:121415400-121442200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:121418000-121442200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:121418200-121443800	Weak transcription	Dnd41	blood
7	chr6:121418600-121446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:121419800-121446200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:121426600-121445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
11	chr6:121432600-121444000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:121433000-121445200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:121433800-121446200	Weak transcription	Pancreas	Pancrea
14	chr6:121434400-121442400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:121436000-121443000	Weak transcription	Primary B cells from cord blood	blood
16	chr6:121436200-121442400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:121436400-121445600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:121436600-121445400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:121438400-121442200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:121438400-121446200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:121440400-121444000	Weak transcription	Brain Germinal Matrix	brain
22	chr6:121440600-121444000	Weak transcription	Fetal Brain Male	brain
23	chr6:121441000-121444600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:121441200-121446200	Weak transcription	HSMM	muscle
25	chr6:121441600-121445200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:121441800-121447600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:121442000-121446200	Weak transcription	Adipose Nuclei	Adipose
28	chr6:121442000-121446400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:121442000-121447600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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