Variant report

Variant	rs9490149
Chromosome Location	chr6:121585179-121585180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121577643..121580353-chr6:121583189..121585636,2	K562	blood:
2	chr6:121577028..121580353-chr6:121583189..121585636,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10428866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154003	0.86[ASN][1000 genomes]
rs1273711	0.93[GIH][hapmap]
rs1273719	1.00[CEU][hapmap]
rs1273749	0.93[GIH][hapmap]
rs1273754	0.93[GIH][hapmap]
rs1273765	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1273773	0.97[ASN][1000 genomes]
rs1273777	0.97[ASN][1000 genomes]
rs1343072	0.86[ASN][1000 genomes]
rs1604279	0.86[ASN][1000 genomes]
rs17083186	1.00[CEU][hapmap]
rs17083373	1.00[CEU][hapmap]
rs17083415	1.00[CEU][hapmap]
rs17154	1.00[CEU][hapmap]
rs1776810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1827299	0.86[ASN][1000 genomes]
rs2102102	0.89[ASN][1000 genomes]
rs2133991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2133992	0.92[CHB][hapmap];0.88[ASN][1000 genomes]
rs2892765	1.00[CEU][hapmap]
rs2892766	0.86[ASN][1000 genomes]
rs35583988	0.86[ASN][1000 genomes]
rs4072142	1.00[CEU][hapmap]
rs4368847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371872	1.00[CEU][hapmap]
rs4476866	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs4610600	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946547	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs4946562	0.85[CHB][hapmap]
rs4946563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58729190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903467	1.00[CEU][hapmap]
rs6936507	0.89[ASN][1000 genomes]
rs7450022	0.92[CHB][hapmap];0.88[ASN][1000 genomes]
rs7451033	1.00[CEU][hapmap]
rs7741356	1.00[CEU][hapmap]
rs7742071	1.00[CEU][hapmap]
rs7743455	1.00[CEU][hapmap]
rs7744891	0.82[CEU][hapmap]
rs7749984	1.00[CEU][hapmap]
rs7761551	1.00[CEU][hapmap]
rs7765795	1.00[CEU][hapmap]
rs7767455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs785407	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs905024	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs905025	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs924528	0.84[ASN][1000 genomes]
rs9320793	0.86[ASN][1000 genomes]
rs9320794	0.92[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs9320802	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372640	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs9372641	0.86[ASN][1000 genomes]
rs9372643	0.86[ASN][1000 genomes]
rs9372644	0.86[ASN][1000 genomes]
rs9372646	0.90[CHB][hapmap]
rs9372647	0.89[ASN][1000 genomes]
rs9375007	0.83[ASN][1000 genomes]
rs9375008	0.83[ASN][1000 genomes]
rs9375009	0.86[ASN][1000 genomes]
rs9375011	0.92[CHB][hapmap];0.85[CHD][hapmap];0.89[ASN][1000 genomes]
rs9375012	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs9387926	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9387928	0.86[ASN][1000 genomes]
rs9387930	0.89[ASN][1000 genomes]
rs9398623	0.92[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs9398625	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs9398631	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs9401373	0.86[ASN][1000 genomes]
rs9401374	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs9401375	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs9401376	0.86[ASN][1000 genomes]
rs9401377	0.86[ASN][1000 genomes]
rs9401378	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs9401379	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs9490136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121536600-121585400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:121567200-121588000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:121573800-121586600	Weak transcription	Fetal Lung	lung
4	chr6:121573800-121587000	Weak transcription	Fetal Kidney	kidney
5	chr6:121575000-121606400	Weak transcription	NH-A	brain
6	chr6:121581000-121589200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:121581200-121588000	Weak transcription	Aorta	Aorta
8	chr6:121582000-121588400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:121582000-121589000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:121582200-121588000	Weak transcription	Pancreas	Pancrea
11	chr6:121582200-121603400	Weak transcription	HSMMtube	muscle
12	chr6:121582400-121588000	Weak transcription	Placenta	Placenta
13	chr6:121582400-121588200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:121582400-121588400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:121582400-121590400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:121582600-121587800	Weak transcription	Ovary	ovary
17	chr6:121582600-121588000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:121582600-121588400	Weak transcription	Gastric	stomach
19	chr6:121582600-121588400	Weak transcription	Left Ventricle	heart
20	chr6:121582800-121587800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:121582800-121587800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:121582800-121588000	Weak transcription	Fetal Stomach	stomach
23	chr6:121583800-121585200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:121584200-121585400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr6:121584200-121588200	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr6:121584600-121585400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr6:121584800-121585200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr6:121585000-121585400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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