Variant report

Variant	rs17154
Chromosome Location	chr6:121509751-121509752
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121508220..121509830-chr6:121510757..121512526,2	MCF-7	breast:
2	chr6:121377193..121378906-chr6:121509031..121511609,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10428866	1.00[CEU][hapmap]
rs11153995	0.85[CHB][hapmap]
rs1273715	0.85[CHB][hapmap]
rs1273719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273721	0.85[CHB][hapmap]
rs1273722	0.85[CHB][hapmap]
rs1273725	0.85[CHB][hapmap]
rs1273726	0.85[CHB][hapmap]
rs1273733	0.85[CHB][hapmap]
rs1273745	0.85[CHB][hapmap]
rs1273748	0.85[CHB][hapmap]
rs1273765	1.00[CEU][hapmap]
rs17083139	0.85[CHB][hapmap]
rs17083165	0.85[CHB][hapmap]
rs17083186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17083190	0.85[CHB][hapmap]
rs17083373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17083415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17083440	0.97[ASN][1000 genomes]
rs1776810	1.00[CEU][hapmap]
rs1776817	0.85[CHB][hapmap]
rs2133990	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133991	1.00[CEU][hapmap]
rs2133994	0.85[CHB][hapmap]
rs2186097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2455056	0.85[CHB][hapmap]
rs2892765	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2995680	0.85[CHB][hapmap]
rs4072142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4132315	1.00[ASN][1000 genomes]
rs4305755	1.00[ASN][1000 genomes]
rs4371872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4584021	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4610600	1.00[CEU][hapmap]
rs4946563	1.00[CEU][hapmap]
rs55731091	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55799213	1.00[ASN][1000 genomes]
rs55983388	1.00[ASN][1000 genomes]
rs56000113	1.00[ASN][1000 genomes]
rs56927912	1.00[ASN][1000 genomes]
rs58124381	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61047660	0.95[ASN][1000 genomes]
rs61293964	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6569180	1.00[CEU][hapmap]
rs6903467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919916	0.97[ASN][1000 genomes]
rs6920055	1.00[ASN][1000 genomes]
rs6920884	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6925413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73526695	1.00[ASN][1000 genomes]
rs73528541	0.97[ASN][1000 genomes]
rs73768932	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73768938	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73768940	0.85[AFR][1000 genomes]
rs7451033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767743	0.85[CHB][hapmap]
rs7741356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7742071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7743455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7744891	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751636	0.97[ASN][1000 genomes]
rs7755977	1.00[ASN][1000 genomes]
rs7759798	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7761551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7765795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767417	1.00[ASN][1000 genomes]
rs7767455	1.00[CEU][hapmap]
rs7768813	0.97[ASN][1000 genomes]
rs7769067	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785400	1.00[CEU][hapmap]
rs785407	1.00[CEU][hapmap]
rs905023	0.85[CHB][hapmap]
rs9320802	1.00[CEU][hapmap]
rs9387926	1.00[CEU][hapmap]
rs9401378	1.00[CEU][hapmap]
rs9490136	1.00[CEU][hapmap]
rs9490148	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9490149	1.00[CEU][hapmap]
rs975679	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121478800-121535400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:121480200-121535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:121480800-121535400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:121481000-121535400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:121487400-121556000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:121494600-121516600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:121495200-121529400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:121496400-121516600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:121496800-121535400	Weak transcription	Fetal Lung	lung
10	chr6:121498000-121518000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:121498600-121535400	Weak transcription	Pancreas	Pancrea
12	chr6:121499000-121516000	Weak transcription	Aorta	Aorta
13	chr6:121499800-121535800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:121500000-121529000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:121500200-121513800	Weak transcription	Ovary	ovary
16	chr6:121502600-121529000	Weak transcription	Left Ventricle	heart
17	chr6:121502800-121521200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:121503000-121516800	Weak transcription	Primary T cells from cord blood	blood
19	chr6:121503000-121520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:121503200-121513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:121503200-121517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:121503200-121517600	Weak transcription	Dnd41	blood
23	chr6:121503800-121514400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:121509200-121510000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:121509600-121575400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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