Variant report

Variant	rs4610600
Chromosome Location	chr6:121619849-121619850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121618290..121620090-chr6:121621929..121623645,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10428866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154003	0.86[ASN][1000 genomes]
rs1273711	0.93[GIH][hapmap]
rs1273719	1.00[CEU][hapmap]
rs1273749	0.93[GIH][hapmap]
rs1273754	0.93[GIH][hapmap]
rs1273765	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1273773	0.97[ASN][1000 genomes]
rs1273777	0.97[ASN][1000 genomes]
rs1343072	0.86[ASN][1000 genomes]
rs1604279	0.86[ASN][1000 genomes]
rs17083186	1.00[CEU][hapmap]
rs17083373	1.00[CEU][hapmap]
rs17083415	1.00[CEU][hapmap]
rs17154	1.00[CEU][hapmap]
rs1776810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1827299	0.86[ASN][1000 genomes]
rs2102102	0.89[ASN][1000 genomes]
rs2133991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2133992	0.92[CHB][hapmap];0.88[ASN][1000 genomes]
rs2892765	1.00[CEU][hapmap]
rs2892766	0.86[ASN][1000 genomes]
rs35583988	0.86[ASN][1000 genomes]
rs4072142	1.00[CEU][hapmap]
rs4368847	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371872	1.00[CEU][hapmap]
rs4476866	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs4946547	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs4946562	0.85[CHB][hapmap]
rs4946563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58729190	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903467	1.00[CEU][hapmap]
rs6936507	0.89[ASN][1000 genomes]
rs7450022	0.92[CHB][hapmap];0.88[ASN][1000 genomes]
rs7451033	1.00[CEU][hapmap]
rs7741356	1.00[CEU][hapmap]
rs7742071	1.00[CEU][hapmap]
rs7743455	1.00[CEU][hapmap]
rs7744891	0.82[CEU][hapmap]
rs7749984	1.00[CEU][hapmap]
rs7761551	1.00[CEU][hapmap]
rs7765795	1.00[CEU][hapmap]
rs7767455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.97[ASN][1000 genomes]
rs785407	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs905024	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs905025	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs924528	0.84[ASN][1000 genomes]
rs9320793	0.86[ASN][1000 genomes]
rs9320794	0.92[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs9320802	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372640	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs9372641	0.86[ASN][1000 genomes]
rs9372643	0.86[ASN][1000 genomes]
rs9372644	0.86[ASN][1000 genomes]
rs9372646	0.90[CHB][hapmap]
rs9372647	0.89[ASN][1000 genomes]
rs9375007	0.83[ASN][1000 genomes]
rs9375008	0.83[ASN][1000 genomes]
rs9375009	0.86[ASN][1000 genomes]
rs9375011	0.92[CHB][hapmap];0.85[CHD][hapmap];0.89[ASN][1000 genomes]
rs9375012	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs9387926	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9387928	0.86[ASN][1000 genomes]
rs9387930	0.89[ASN][1000 genomes]
rs9398623	0.92[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]
rs9398625	0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs9398631	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs9401373	0.86[ASN][1000 genomes]
rs9401374	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs9401375	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs9401376	0.86[ASN][1000 genomes]
rs9401377	0.86[ASN][1000 genomes]
rs9401378	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs9401379	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs9490136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9490149	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1017944	chr6:121600538-121644362	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121585600-121625000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:121588400-121655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:121588800-121642000	Weak transcription	Left Ventricle	heart
5	chr6:121589000-121632800	Weak transcription	Fetal Lung	lung
6	chr6:121589000-121635200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:121589000-121637600	Weak transcription	Ovary	ovary
8	chr6:121589000-121654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:121589200-121622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:121589200-121630000	Weak transcription	Fetal Intestine Large	intestine
11	chr6:121589200-121631800	Weak transcription	Fetal Intestine Small	intestine
12	chr6:121589200-121655000	Weak transcription	Fetal Stomach	stomach
13	chr6:121590200-121630800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:121594200-121654800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:121594600-121622400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:121598000-121622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:121601600-121635200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:121602600-121637800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:121603000-121632600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:121604000-121645200	Weak transcription	Fetal Kidney	kidney
21	chr6:121604400-121642000	Weak transcription	Primary B cells from cord blood	blood
22	chr6:121604800-121653000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:121606600-121655000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:121611000-121623200	Weak transcription	Fetal Brain Male	brain
25	chr6:121611000-121630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:121611000-121640400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:121611200-121655000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:121612600-121637600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:121612800-121624000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:121613200-121637600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:121613400-121631000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:121613400-121640400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:121614000-121630600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:121614200-121631600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:121614200-121633200	Weak transcription	Dnd41	blood
36	chr6:121614200-121640400	Weak transcription	Brain Hippocampus Middle	brain
37	chr6:121615600-121655000	Weak transcription	Pancreas	Pancrea
38	chr6:121616000-121630000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:121616200-121655000	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:121617200-121651600	Weak transcription	GM12878-XiMat	blood
41	chr6:121617800-121628600	Weak transcription	Primary T cells from cord blood	blood
42	chr6:121619000-121640400	Weak transcription	Brain Anterior Caudate	brain
43	chr6:121619200-121630800	Weak transcription	Osteobl	bone
44	chr6:121619800-121620000	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links