Variant report

Variant	rs17083186
Chromosome Location	chr6:121434153-121434154
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121432266..121434727-chr6:121435842..121438416,2	K562	blood:

Variant related genes	Relation type
ENSG00000146350	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10428866	1.00[CEU][hapmap]
rs11153995	0.85[CHB][hapmap]
rs12524843	0.82[ASN][1000 genomes]
rs1273715	0.85[CHB][hapmap]
rs1273719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273720	0.82[CHB][hapmap]
rs1273721	0.85[CHB][hapmap]
rs1273722	0.85[CHB][hapmap]
rs1273725	0.85[CHB][hapmap]
rs1273726	0.85[CHB][hapmap]
rs1273733	0.85[CHB][hapmap]
rs1273745	0.85[CHB][hapmap]
rs1273748	0.85[CHB][hapmap]
rs1273765	1.00[CEU][hapmap]
rs17083139	0.85[CHB][hapmap]
rs17083165	0.85[CHB][hapmap]
rs17083190	0.85[CHB][hapmap]
rs17083373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[ASN][1000 genomes]
rs17154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776810	1.00[CEU][hapmap]
rs1776817	0.85[CHB][hapmap]
rs2133990	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2133991	1.00[CEU][hapmap]
rs2133994	0.85[CHB][hapmap]
rs2455056	0.85[CHB][hapmap]
rs2892765	1.00[CEU][hapmap];0.94[ASN][1000 genomes]
rs2995680	0.85[CHB][hapmap]
rs4132315	0.94[ASN][1000 genomes]
rs4371872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs4610600	1.00[CEU][hapmap]
rs4946563	1.00[CEU][hapmap]
rs55731091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55799213	0.94[ASN][1000 genomes]
rs55983388	0.94[ASN][1000 genomes]
rs56000113	0.94[ASN][1000 genomes]
rs56927912	0.94[ASN][1000 genomes]
rs58124381	0.94[ASN][1000 genomes]
rs61047660	0.89[ASN][1000 genomes]
rs61293964	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6569180	1.00[CEU][hapmap]
rs6903467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6920055	0.94[ASN][1000 genomes]
rs6925413	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6941079	0.82[ASN][1000 genomes]
rs73526695	0.94[ASN][1000 genomes]
rs73768932	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73768938	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7451033	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs767743	0.85[CHB][hapmap]
rs7741356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7742071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[ASN][1000 genomes]
rs7744891	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751291	0.85[CHB][hapmap]
rs7755977	0.94[ASN][1000 genomes]
rs7759798	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7765795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767417	0.94[ASN][1000 genomes]
rs7769067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs785400	1.00[CEU][hapmap]
rs785407	1.00[CEU][hapmap]
rs905023	0.84[CHB][hapmap]
rs9320802	1.00[CEU][hapmap]
rs9387926	1.00[CEU][hapmap]
rs9401378	1.00[CEU][hapmap]
rs9490136	1.00[CEU][hapmap]
rs9490148	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9490149	1.00[CEU][hapmap]
rs975679	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121390800-121444000	Weak transcription	Ovary	ovary
2	chr6:121403600-121443400	Weak transcription	Left Ventricle	heart
3	chr6:121411800-121443000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:121415400-121442200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:121418000-121442200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:121418200-121436000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:121418200-121443800	Weak transcription	Dnd41	blood
8	chr6:121418600-121446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:121418800-121434400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:121419800-121446200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:121426600-121445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:121429800-121434600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:121432000-121434400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:121432600-121444000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:121433000-121445200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:121433200-121434400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:121433800-121446200	Weak transcription	Pancreas	Pancrea

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