Variant report

Variant	rs55731091
Chromosome Location	chr6:121447445-121447446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12524843	0.82[ASN][1000 genomes]
rs1273719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083373	0.94[ASN][1000 genomes]
rs17083415	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17154	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2133990	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2892765	0.94[ASN][1000 genomes]
rs4072142	0.94[ASN][1000 genomes]
rs4132315	0.94[ASN][1000 genomes]
rs4371872	0.94[ASN][1000 genomes]
rs55799213	0.94[ASN][1000 genomes]
rs55983388	0.94[ASN][1000 genomes]
rs56000113	0.94[ASN][1000 genomes]
rs56927912	0.94[ASN][1000 genomes]
rs58124381	0.94[ASN][1000 genomes]
rs61047660	0.89[ASN][1000 genomes]
rs61293964	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903467	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6920055	0.94[ASN][1000 genomes]
rs6925413	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6941079	0.82[ASN][1000 genomes]
rs73526695	0.94[ASN][1000 genomes]
rs73768932	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73768938	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7451033	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7741356	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7742071	0.94[ASN][1000 genomes]
rs7744891	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749984	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755977	0.94[ASN][1000 genomes]
rs7759798	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7765795	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767417	0.94[ASN][1000 genomes]
rs7769067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490148	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:121441800-121447600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:121442000-121447600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:121443400-121447800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:121444000-121448200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:121445000-121447600	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr6:121445200-121447600	ZNF genes & repeats	Dnd41	blood
8	chr6:121446200-121447600	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr6:121446200-121447600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
10	chr6:121446600-121447800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:121446800-121447600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:121446800-121447800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:121446800-121448000	Weak transcription	HSMM	muscle
14	chr6:121446800-121449000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:121447000-121447600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:121447000-121447600	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:121447000-121447600	Weak transcription	Gastric	stomach
19	chr6:121447000-121447800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:121447000-121448000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:121447000-121448200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:121447000-121448200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:121447000-121448200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:121447000-121448800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:121447000-121448800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:121447000-121450200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:121447000-121451000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:121447000-121455600	Weak transcription	Aorta	Aorta
29	chr6:121447000-121463200	Weak transcription	Ovary	ovary
30	chr6:121447200-121447600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:121447200-121447600	Weak transcription	Pancreas	Pancrea
32	chr6:121447200-121447600	Weak transcription	Osteobl	bone
33	chr6:121447200-121447800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:121447200-121448200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:121447200-121448200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:121447200-121448400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:121447200-121448600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:121447200-121448800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:121447200-121448800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:121447200-121450600	Weak transcription	Fetal Stomach	stomach
41	chr6:121447200-121451400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:121447200-121451400	Weak transcription	Fetal Kidney	kidney
43	chr6:121447200-121451600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:121447200-121451600	Weak transcription	Placenta	Placenta
45	chr6:121447200-121451800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr6:121447200-121452600	Weak transcription	Brain Angular Gyrus	brain
47	chr6:121447200-121455400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:121447200-121455400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:121447200-121463000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:121447200-121463200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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