Variant report

Variant	rs7759798
Chromosome Location	chr6:121599545-121599546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1273719	0.94[ASN][1000 genomes]
rs17083186	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17083373	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083440	0.97[ASN][1000 genomes]
rs17154	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2133990	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186097	0.97[ASN][1000 genomes]
rs2892765	1.00[ASN][1000 genomes]
rs4072142	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132315	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305755	1.00[ASN][1000 genomes]
rs4371872	1.00[ASN][1000 genomes]
rs4584021	1.00[ASN][1000 genomes]
rs55731091	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55799213	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55983388	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56000113	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56927912	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58124381	1.00[ASN][1000 genomes]
rs61047660	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61293964	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903467	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6919916	0.97[ASN][1000 genomes]
rs6920055	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920884	0.97[ASN][1000 genomes]
rs6925413	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941089	1.00[ASN][1000 genomes]
rs73526695	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528541	0.97[ASN][1000 genomes]
rs73768932	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73768938	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73768940	0.82[AFR][1000 genomes]
rs7451033	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7741356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742071	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744891	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7749984	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751636	0.97[ASN][1000 genomes]
rs7755977	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757350	0.85[EUR][1000 genomes]
rs7761551	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765795	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7767417	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768813	0.97[ASN][1000 genomes]
rs9490148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121575000-121606400	Weak transcription	NH-A	brain
2	chr6:121582200-121603400	Weak transcription	HSMMtube	muscle
3	chr6:121585400-121614200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:121585600-121625000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:121586400-121655000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:121586600-121613000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:121588200-121616800	Weak transcription	Primary T cells from cord blood	blood
8	chr6:121588400-121655200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:121588600-121612000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:121588600-121617600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:121588800-121604000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:121588800-121642000	Weak transcription	Left Ventricle	heart
13	chr6:121589000-121602600	Weak transcription	Liver	Liver
14	chr6:121589000-121632800	Weak transcription	Fetal Lung	lung
15	chr6:121589000-121635200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:121589000-121637600	Weak transcription	Ovary	ovary
17	chr6:121589000-121654200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:121589200-121601400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:121589200-121605200	Weak transcription	Dnd41	blood
20	chr6:121589200-121622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:121589200-121630000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:121589200-121631800	Weak transcription	Fetal Intestine Small	intestine
23	chr6:121589200-121655000	Weak transcription	Fetal Stomach	stomach
24	chr6:121589400-121612400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:121589600-121615600	Weak transcription	Fetal Brain Female	brain
26	chr6:121590200-121630800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:121593800-121605800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:121594000-121606200	Weak transcription	NHLF	lung
29	chr6:121594200-121654800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:121594600-121622400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:121595400-121616600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:121596000-121605400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:121596600-121605200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:121597200-121603400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:121597600-121617200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:121598000-121622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:121598200-121612200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:121599000-121600400	Enhancers	Primary B cells from cord blood	blood
39	chr6:121599400-121612800	Weak transcription	Brain Substantia Nigra	brain

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