Variant report

Variant	rs7768813
Chromosome Location	chr6:121666492-121666493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17083373	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083415	0.97[ASN][1000 genomes]
rs17083440	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154	0.97[ASN][1000 genomes]
rs2133990	0.97[ASN][1000 genomes]
rs2186097	1.00[ASN][1000 genomes]
rs2892765	0.97[ASN][1000 genomes]
rs4072142	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132315	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4305755	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4371872	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4584021	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55799213	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55983388	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56000113	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56927912	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58124381	0.97[ASN][1000 genomes]
rs58754007	0.97[AFR][1000 genomes]
rs61047660	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61293964	0.97[ASN][1000 genomes]
rs6903467	0.97[ASN][1000 genomes]
rs6919916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920055	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6920884	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925413	0.97[ASN][1000 genomes]
rs6941089	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73526695	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73528541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73768932	0.97[ASN][1000 genomes]
rs73768938	0.97[ASN][1000 genomes]
rs7451033	0.97[ASN][1000 genomes]
rs7741356	0.97[ASN][1000 genomes]
rs7742071	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743455	0.97[ASN][1000 genomes]
rs7744891	0.97[ASN][1000 genomes]
rs7749984	0.97[ASN][1000 genomes]
rs7751636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755977	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757350	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7759798	0.97[ASN][1000 genomes]
rs7761551	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7765795	0.97[ASN][1000 genomes]
rs7767417	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9490148	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970057	chr6:121663325-121679145	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121661400-121666600	Weak transcription	K562	blood

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