Variant report

Variant	rs2186097
Chromosome Location	chr6:121663499-121663500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121653058..121658241-chr6:121659261..121663570,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146350	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1273745	0.85[CHB][hapmap]
rs1273748	0.85[CHB][hapmap]
rs17083373	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17083415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17083440	1.00[ASN][1000 genomes]
rs17154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1776817	0.85[CHB][hapmap]
rs2133990	0.97[ASN][1000 genomes]
rs2455056	0.85[CHB][hapmap]
rs2892765	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2995680	0.85[CHB][hapmap]
rs4072142	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4132315	0.97[ASN][1000 genomes]
rs4305755	0.97[ASN][1000 genomes]
rs4371872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4584021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs55799213	0.97[ASN][1000 genomes]
rs55983388	0.97[ASN][1000 genomes]
rs56000113	0.97[ASN][1000 genomes]
rs56927912	0.97[ASN][1000 genomes]
rs58124381	0.97[ASN][1000 genomes]
rs61047660	0.92[ASN][1000 genomes]
rs61293964	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6919916	1.00[ASN][1000 genomes]
rs6920055	0.97[ASN][1000 genomes]
rs6920884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6925413	0.97[ASN][1000 genomes]
rs6941089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73526695	0.97[ASN][1000 genomes]
rs73528541	1.00[ASN][1000 genomes]
rs73768932	0.97[ASN][1000 genomes]
rs73768938	0.97[ASN][1000 genomes]
rs7451033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7741356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7742071	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7743455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7744891	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7749984	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7751636	1.00[ASN][1000 genomes]
rs7755977	0.97[ASN][1000 genomes]
rs7759798	0.97[ASN][1000 genomes]
rs7761551	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7765795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7767417	0.97[ASN][1000 genomes]
rs7768813	1.00[ASN][1000 genomes]
rs785407	1.00[CEU][hapmap]
rs9490148	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv970057	chr6:121663325-121679145	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2186097	MECR	trans	brain	seeQTL
rs2186097	RSRC1	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121661400-121666600	Weak transcription	K562	blood

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