Variant report

Variant	rs7769067
Chromosome Location	chr6:121390055-121390056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12524843	0.82[ASN][1000 genomes]
rs1273719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2133990	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2892765	0.94[ASN][1000 genomes]
rs4132315	0.94[ASN][1000 genomes]
rs55731091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55983388	0.94[ASN][1000 genomes]
rs56927912	0.94[ASN][1000 genomes]
rs58124381	0.94[ASN][1000 genomes]
rs61293964	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6903467	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6920055	0.94[ASN][1000 genomes]
rs6925413	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6941079	0.82[ASN][1000 genomes]
rs73768932	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73768938	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7451033	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7744891	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749984	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765795	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9490148	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv464037	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604571	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv886593	chr6:121362591-121414770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121386400-121390200	Weak transcription	Aorta	Aorta
2	chr6:121386800-121390200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:121389800-121390600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:121390000-121390800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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