Variant report

Variant	rs1273720
Chromosome Location	chr6:121442841-121442842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10457412	0.89[EUR][1000 genomes]
rs11153995	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11154014	0.85[CEU][hapmap]
rs11965633	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12205580	0.83[AMR][1000 genomes]
rs12524806	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12525761	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12526242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12527636	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12527842	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12527994	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12528443	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529782	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1273706	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273715	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273718	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1273721	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273722	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273724	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273725	0.90[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273726	0.90[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273728	0.84[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273733	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273743	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273745	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273746	0.84[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273748	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1290678	0.83[EUR][1000 genomes]
rs1392863	0.89[EUR][1000 genomes]
rs1604278	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17083139	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17083165	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs17083186	0.82[CHB][hapmap]
rs17083187	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083190	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1776817	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1827299	0.81[AMR][1000 genomes]
rs1846866	0.83[CEU][hapmap];0.88[AMR][1000 genomes]
rs1891646	0.84[CEU][hapmap]
rs2133992	0.83[CEU][hapmap]
rs2133994	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2138504	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2138505	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs218867	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2202066	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2203588	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2203589	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358137	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455056	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2797955	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2995680	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs3905223	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs391331	0.85[EUR][1000 genomes]
rs407586	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs4321860	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4412234	0.85[CEU][hapmap]
rs443149	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs4461766	0.85[CEU][hapmap]
rs4476866	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs4601176	0.82[EUR][1000 genomes]
rs4946535	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4946547	0.83[CEU][hapmap];0.88[AMR][1000 genomes]
rs4946562	1.00[CEU][hapmap]
rs56139973	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59805136	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs60378317	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs624687	0.81[EUR][1000 genomes]
rs6569174	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6921681	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6926502	0.84[CEU][hapmap]
rs6931402	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73536420	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73536422	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73536428	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73536481	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73536482	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7450022	0.83[CEU][hapmap]
rs7450632	0.84[CEU][hapmap]
rs767743	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7748115	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751291	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7756848	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768058	0.85[CEU][hapmap]
rs7769564	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769807	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs785395	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs785399	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884045	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs905023	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs905024	0.83[CEU][hapmap]
rs905025	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs9320791	0.89[EUR][1000 genomes]
rs9320794	0.81[CEU][hapmap]
rs9372640	0.83[CEU][hapmap]
rs9372641	0.88[AMR][1000 genomes]
rs9372642	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9372643	0.85[AMR][1000 genomes]
rs9372644	0.81[AMR][1000 genomes]
rs9372646	0.83[CEU][hapmap]
rs9375004	0.83[EUR][1000 genomes]
rs9375007	0.88[AMR][1000 genomes]
rs9375011	0.81[CEU][hapmap]
rs9375012	0.83[CEU][hapmap]
rs9375022	0.85[CEU][hapmap]
rs9385187	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs9387920	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs9387922	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9387924	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs9387929	0.84[CEU][hapmap]
rs9387942	0.84[CEU][hapmap]
rs9398622	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs9398623	0.81[CEU][hapmap]
rs9398625	0.83[CEU][hapmap]
rs9401368	0.84[EUR][1000 genomes]
rs9401373	0.88[AMR][1000 genomes]
rs9401374	0.83[CEU][hapmap];0.85[AMR][1000 genomes]
rs9401375	0.91[CEU][hapmap]
rs9401379	0.83[CEU][hapmap]
rs9482119	0.85[CEU][hapmap]
rs953616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975679	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs976611	0.85[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121390800-121444000	Weak transcription	Ovary	ovary
2	chr6:121403600-121443400	Weak transcription	Left Ventricle	heart
3	chr6:121411800-121443000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:121418200-121443800	Weak transcription	Dnd41	blood
5	chr6:121418600-121446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:121419800-121446200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:121426600-121445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
9	chr6:121432600-121444000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:121433000-121445200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:121433800-121446200	Weak transcription	Pancreas	Pancrea
12	chr6:121436000-121443000	Weak transcription	Primary B cells from cord blood	blood
13	chr6:121436400-121445600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:121436600-121445400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:121438400-121446200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:121440400-121444000	Weak transcription	Brain Germinal Matrix	brain
17	chr6:121440600-121444000	Weak transcription	Fetal Brain Male	brain
18	chr6:121441000-121444600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:121441200-121446200	Weak transcription	HSMM	muscle
20	chr6:121441600-121445200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:121441800-121447600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:121442000-121446200	Weak transcription	Adipose Nuclei	Adipose
23	chr6:121442000-121446400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:121442000-121447600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:121442200-121444000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:121442400-121444000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:121442400-121444000	Weak transcription	Fetal Lung	lung
28	chr6:121442400-121444600	Weak transcription	Fetal Kidney	kidney
29	chr6:121442400-121446200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:121442600-121443400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:121442600-121445200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:121442600-121446200	Weak transcription	Esophagus	oesophagus
33	chr6:121442600-121446200	Weak transcription	Placenta	Placenta
34	chr6:121442800-121444000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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