Variant report

Variant	rs1273743
Chromosome Location	chr6:121463900-121463901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10457412	0.89[EUR][1000 genomes]
rs11965633	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12205580	0.83[AMR][1000 genomes]
rs12524367	0.82[ASN][1000 genomes]
rs12524806	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12525761	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12526242	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12527636	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12527842	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12527994	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12528443	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529394	0.82[ASN][1000 genomes]
rs12529782	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273706	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273707	0.82[ASN][1000 genomes]
rs1273715	0.82[ASN][1000 genomes]
rs1273717	0.82[ASN][1000 genomes]
rs1273718	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273720	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273721	0.82[ASN][1000 genomes]
rs1273722	0.82[ASN][1000 genomes]
rs1273724	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273725	0.82[ASN][1000 genomes]
rs1273726	0.82[ASN][1000 genomes]
rs1273728	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273732	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273733	0.82[ASN][1000 genomes]
rs1273734	0.82[ASN][1000 genomes]
rs1273737	0.82[ASN][1000 genomes]
rs1273738	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273741	0.82[ASN][1000 genomes]
rs1273742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273745	0.82[ASN][1000 genomes]
rs1273746	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273748	0.82[ASN][1000 genomes]
rs1273755	0.82[ASN][1000 genomes]
rs1273756	0.82[ASN][1000 genomes]
rs1290678	0.83[EUR][1000 genomes]
rs1298045	0.82[ASN][1000 genomes]
rs1314808	0.82[ASN][1000 genomes]
rs1314809	0.82[ASN][1000 genomes]
rs1392863	0.89[EUR][1000 genomes]
rs1604278	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17083165	0.82[ASN][1000 genomes]
rs17083177	0.82[ASN][1000 genomes]
rs17083183	0.82[ASN][1000 genomes]
rs17083187	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17083190	0.80[ASN][1000 genomes]
rs1776817	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1827299	0.81[AMR][1000 genomes]
rs1846866	0.88[AMR][1000 genomes]
rs2138504	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2138505	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs218867	0.83[EUR][1000 genomes]
rs2202066	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2203588	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2203589	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2358137	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455056	0.82[ASN][1000 genomes]
rs2651526	0.82[ASN][1000 genomes]
rs2797955	0.82[ASN][1000 genomes]
rs2995680	0.82[ASN][1000 genomes]
rs3905223	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs391331	0.85[EUR][1000 genomes]
rs407586	0.86[EUR][1000 genomes]
rs4321860	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs443149	0.85[EUR][1000 genomes]
rs4476866	0.83[AMR][1000 genomes]
rs4601176	0.82[EUR][1000 genomes]
rs4946535	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4946547	0.88[AMR][1000 genomes]
rs56139973	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56721703	0.82[ASN][1000 genomes]
rs56822960	0.80[ASN][1000 genomes]
rs59805136	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs60378317	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs624687	0.81[EUR][1000 genomes]
rs6569174	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6921681	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6931402	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6939178	0.82[ASN][1000 genomes]
rs73536420	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73536422	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73536428	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73536481	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73536482	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7748115	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7751291	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7756848	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768927	0.82[ASN][1000 genomes]
rs7769564	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7769807	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7771625	0.82[ASN][1000 genomes]
rs785395	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs785397	0.82[ASN][1000 genomes]
rs785399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs884045	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs905023	0.80[ASN][1000 genomes]
rs905025	0.83[AMR][1000 genomes]
rs9320791	0.89[EUR][1000 genomes]
rs9372641	0.88[AMR][1000 genomes]
rs9372642	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9372643	0.85[AMR][1000 genomes]
rs9372644	0.81[AMR][1000 genomes]
rs9375004	0.83[EUR][1000 genomes]
rs9375007	0.88[AMR][1000 genomes]
rs9385187	0.84[AMR][1000 genomes]
rs9387920	0.85[EUR][1000 genomes]
rs9387922	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9387924	0.83[EUR][1000 genomes]
rs9398622	0.89[EUR][1000 genomes]
rs9401368	0.84[EUR][1000 genomes]
rs9401373	0.88[AMR][1000 genomes]
rs9401374	0.85[AMR][1000 genomes]
rs953616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975679	0.82[ASN][1000 genomes]
rs976611	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121446800-121464600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:121447200-121465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:121447800-121465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:121459400-121464400	Weak transcription	HSMM	muscle
10	chr6:121462400-121464200	ZNF genes & repeats	Dnd41	blood
11	chr6:121463400-121469600	Weak transcription	Fetal Stomach	stomach
12	chr6:121463600-121474200	Weak transcription	Ovary	ovary
13	chr6:121463600-121476800	Weak transcription	Gastric	stomach
14	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea

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