Variant report

Variant	rs2797955
Chromosome Location	chr6:121481728-121481729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs11153995	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12205580	0.81[EUR][1000 genomes]
rs12524367	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524843	0.86[ASN][1000 genomes]
rs12526242	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs12529234	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12529394	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529782	0.81[ASN][1000 genomes]
rs1273707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1273715	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273718	0.85[JPT][hapmap]
rs1273719	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1273720	0.81[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1273721	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273722	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273725	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273726	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273732	0.84[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1273733	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273734	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273736	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1273737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273738	0.90[CEU][hapmap]
rs1273741	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273742	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs1273743	0.82[ASN][1000 genomes]
rs1273745	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273748	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273755	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1273756	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1298045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604278	0.81[EUR][1000 genomes]
rs17083139	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17083165	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083177	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083183	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083190	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1776817	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1846866	1.00[CEU][hapmap]
rs1935940	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2133992	1.00[CEU][hapmap]
rs2133994	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2202066	0.81[EUR][1000 genomes]
rs2358136	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2455056	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2651526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892765	1.00[JPT][hapmap]
rs2995680	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102641	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4321860	0.81[EUR][1000 genomes]
rs4476866	1.00[CEU][hapmap]
rs4498397	0.83[CEU][hapmap]
rs4946537	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4946547	1.00[CEU][hapmap]
rs4946562	0.84[CEU][hapmap]
rs56721703	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822960	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59919987	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905696	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905992	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6939178	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941235	0.84[CEU][hapmap]
rs73536406	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536417	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536430	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536471	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536481	0.81[ASN][1000 genomes]
rs73536482	0.81[ASN][1000 genomes]
rs7450022	1.00[CEU][hapmap]
rs767743	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7751291	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7768927	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771625	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772236	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs785397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs905023	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs905024	1.00[CEU][hapmap]
rs905025	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9320793	1.00[CEU][hapmap]
rs9320794	1.00[CEU][hapmap]
rs9372640	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9372646	1.00[CEU][hapmap]
rs9375011	1.00[CEU][hapmap]
rs9375012	1.00[CEU][hapmap]
rs9385187	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9387922	0.81[EUR][1000 genomes]
rs9398623	1.00[CEU][hapmap]
rs9398625	1.00[CEU][hapmap]
rs9398631	0.84[CEU][hapmap]
rs9401374	1.00[CEU][hapmap]
rs9401375	1.00[CEU][hapmap]
rs9401379	1.00[CEU][hapmap]
rs9482118	0.84[CEU][hapmap]
rs953616	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs975679	0.81[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121473400-121499000	Weak transcription	Right Ventricle	heart
2	chr6:121474200-121483400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:121474400-121483200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:121474400-121483400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:121474600-121485200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:121474600-121508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:121474800-121484000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:121475000-121482400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:121475400-121483000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:121475600-121481800	Weak transcription	Pancreas	Pancrea
11	chr6:121475600-121482400	Weak transcription	Placenta	Placenta
12	chr6:121475600-121483600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:121475600-121508600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:121475800-121483600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:121477000-121482200	Weak transcription	Fetal Heart	heart
16	chr6:121477400-121482000	Weak transcription	Fetal Kidney	kidney
17	chr6:121477400-121485000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:121478400-121482600	Weak transcription	Brain Angular Gyrus	brain
19	chr6:121478800-121484000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:121478800-121535400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:121479000-121482800	Weak transcription	Fetal Brain Male	brain
22	chr6:121479000-121505000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:121479200-121482200	Strong transcription	Dnd41	blood
24	chr6:121479200-121502600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:121479600-121482200	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:121479600-121483600	Weak transcription	K562	blood
27	chr6:121479600-121501400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:121480200-121482600	Weak transcription	Ovary	ovary
29	chr6:121480200-121483200	Weak transcription	Fetal Lung	lung
30	chr6:121480200-121502400	Weak transcription	Left Ventricle	heart
31	chr6:121480200-121504600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:121480200-121535600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:121480400-121482000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:121480400-121505400	Weak transcription	Adipose Nuclei	Adipose
35	chr6:121480600-121501000	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:121480600-121502200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:121480800-121482800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:121480800-121484000	Weak transcription	Liver	Liver
39	chr6:121480800-121498600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:121480800-121499200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr6:121480800-121535400	Weak transcription	Fetal Intestine Large	intestine
42	chr6:121481000-121482000	Weak transcription	Primary T cells from cord blood	blood
43	chr6:121481000-121483600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:121481000-121484000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:121481000-121502600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr6:121481000-121535400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:121481400-121483400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:121481400-121488400	Weak transcription	Primary B cells from cord blood	blood

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