Variant report

Variant	rs10457412
Chromosome Location	chr6:121470446-121470447
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11965633	0.87[EUR][1000 genomes]
rs12524806	0.87[EUR][1000 genomes]
rs12525761	0.87[EUR][1000 genomes]
rs12526242	0.87[EUR][1000 genomes]
rs12527636	0.87[EUR][1000 genomes]
rs12527842	0.89[EUR][1000 genomes]
rs12527994	0.89[EUR][1000 genomes]
rs12528443	0.89[EUR][1000 genomes]
rs12529782	0.83[EUR][1000 genomes]
rs1273706	0.89[EUR][1000 genomes]
rs1273718	0.88[EUR][1000 genomes]
rs1273720	0.89[EUR][1000 genomes]
rs1273724	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1273728	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1273731	0.89[EUR][1000 genomes]
rs1273738	0.89[EUR][1000 genomes]
rs1273742	0.89[EUR][1000 genomes]
rs1273743	0.89[EUR][1000 genomes]
rs1273746	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1290678	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1392863	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1604278	0.87[AFR][1000 genomes]
rs17083187	0.89[EUR][1000 genomes]
rs1846865	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1846866	0.84[AFR][1000 genomes]
rs1891646	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1995313	0.86[AMR][1000 genomes]
rs2138504	0.82[EUR][1000 genomes]
rs2138505	0.85[EUR][1000 genomes]
rs218867	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2202066	0.87[AFR][1000 genomes]
rs2203588	0.87[EUR][1000 genomes]
rs2203589	0.87[EUR][1000 genomes]
rs2358137	0.87[EUR][1000 genomes]
rs3905223	0.87[EUR][1000 genomes]
rs391331	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3956400	0.84[AMR][1000 genomes]
rs4027128	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs407586	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4321860	0.87[AFR][1000 genomes]
rs4412234	0.86[AMR][1000 genomes]
rs443149	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4498397	0.82[AMR][1000 genomes]
rs450762	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4601176	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4946535	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4946547	0.84[AFR][1000 genomes]
rs56139973	0.84[EUR][1000 genomes]
rs59805136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60378317	0.87[EUR][1000 genomes]
rs624687	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6569174	0.95[AFR][1000 genomes]
rs6916050	0.86[AMR][1000 genomes]
rs6921681	0.89[EUR][1000 genomes]
rs6926502	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6931402	0.89[EUR][1000 genomes]
rs73536420	0.86[EUR][1000 genomes]
rs73536422	0.87[EUR][1000 genomes]
rs73536428	0.87[EUR][1000 genomes]
rs73536481	0.89[EUR][1000 genomes]
rs73536482	0.89[EUR][1000 genomes]
rs7450632	0.86[AMR][1000 genomes]
rs7748115	0.87[EUR][1000 genomes]
rs7751291	0.89[EUR][1000 genomes]
rs7756848	0.86[EUR][1000 genomes]
rs7764420	0.85[ASN][1000 genomes]
rs7768058	0.86[AMR][1000 genomes]
rs7769564	0.87[EUR][1000 genomes]
rs7769807	0.87[EUR][1000 genomes]
rs7771881	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs785395	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs785399	0.87[EUR][1000 genomes]
rs884045	0.89[EUR][1000 genomes]
rs9320791	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372641	0.91[AFR][1000 genomes]
rs9372642	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9372645	0.81[AMR][1000 genomes]
rs9375004	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375007	0.84[AFR][1000 genomes]
rs9375013	0.82[AMR][1000 genomes]
rs9387920	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9387922	0.95[AFR][1000 genomes]
rs9387924	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9387929	0.86[AMR][1000 genomes]
rs9398622	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401368	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9401372	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9401373	0.84[AFR][1000 genomes]
rs9401378	0.81[AMR][1000 genomes]
rs9401380	0.86[AMR][1000 genomes]
rs9401382	0.84[AMR][1000 genomes]
rs9482118	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9482119	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs953616	0.89[EUR][1000 genomes]
rs976611	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121447200-121473800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:121447200-121474200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:121447200-121475000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:121447400-121474200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:121447600-121473200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:121463600-121474200	Weak transcription	Ovary	ovary
7	chr6:121463600-121476800	Weak transcription	Gastric	stomach
8	chr6:121463800-121474400	Weak transcription	Pancreas	Pancrea
9	chr6:121464200-121473200	Weak transcription	Dnd41	blood
10	chr6:121465400-121474400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:121465600-121473800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:121469400-121477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:121470000-121474200	Weak transcription	Fetal Stomach	stomach
14	chr6:121470000-121474400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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