Variant report

Variant	rs6931402
Chromosome Location	chr6:121412293-121412294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121411153..121412968-chr6:121418070..121419760,2	MCF-7	breast:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10457412	0.89[EUR][1000 genomes]
rs11153995	0.81[ASN][1000 genomes]
rs11965633	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205580	0.82[AMR][1000 genomes]
rs12524806	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525761	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526242	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527636	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529234	0.81[ASN][1000 genomes]
rs12529782	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273706	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273718	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1273720	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273724	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273728	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1273731	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273732	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273738	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273742	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273743	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1273746	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1290678	0.83[EUR][1000 genomes]
rs1392863	0.89[EUR][1000 genomes]
rs1604278	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17083139	0.81[ASN][1000 genomes]
rs17083187	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776817	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1846866	0.87[AMR][1000 genomes]
rs1935940	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2133994	0.81[ASN][1000 genomes]
rs2138504	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2138505	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs218867	0.83[EUR][1000 genomes]
rs2202066	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2203588	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2203589	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2358136	0.81[ASN][1000 genomes]
rs2358137	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102641	0.81[ASN][1000 genomes]
rs3905223	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs391331	0.85[EUR][1000 genomes]
rs407586	0.86[EUR][1000 genomes]
rs4321860	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs443149	0.85[EUR][1000 genomes]
rs4476866	0.82[AMR][1000 genomes]
rs4601176	0.82[EUR][1000 genomes]
rs4946535	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4946537	0.81[ASN][1000 genomes]
rs4946547	0.87[AMR][1000 genomes]
rs56139973	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56822960	0.82[ASN][1000 genomes]
rs59805136	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs59919987	0.81[ASN][1000 genomes]
rs60378317	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624687	0.81[EUR][1000 genomes]
rs6569174	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6905696	0.81[ASN][1000 genomes]
rs6905992	0.81[ASN][1000 genomes]
rs6921681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536406	0.81[ASN][1000 genomes]
rs73536417	0.81[ASN][1000 genomes]
rs73536420	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536422	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536428	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536430	0.81[ASN][1000 genomes]
rs73536471	0.81[ASN][1000 genomes]
rs73536481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73536482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs767743	0.81[ASN][1000 genomes]
rs7748115	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7756848	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769564	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769807	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772236	0.81[ASN][1000 genomes]
rs785395	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs785399	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs884045	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs905025	0.82[AMR][1000 genomes]
rs9320791	0.89[EUR][1000 genomes]
rs9372641	0.87[AMR][1000 genomes]
rs9372642	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9372643	0.84[AMR][1000 genomes]
rs9375004	0.83[EUR][1000 genomes]
rs9375007	0.87[AMR][1000 genomes]
rs9385187	0.83[AMR][1000 genomes]
rs9387920	0.85[EUR][1000 genomes]
rs9387922	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9387924	0.83[EUR][1000 genomes]
rs9398622	0.89[EUR][1000 genomes]
rs9401368	0.84[EUR][1000 genomes]
rs9401373	0.87[AMR][1000 genomes]
rs9401374	0.84[AMR][1000 genomes]
rs953616	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs976611	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv886593	chr6:121362591-121414770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1830193	chr6:121392847-121425387	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121390800-121444000	Weak transcription	Ovary	ovary
2	chr6:121403600-121443400	Weak transcription	Left Ventricle	heart
3	chr6:121405800-121432000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:121411800-121412600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:121411800-121443000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:121412200-121413200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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