Variant report

Variant	rs7769807
Chromosome Location	chr6:121390375-121390376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10457412	0.87[EUR][1000 genomes]
rs11153995	0.81[ASN][1000 genomes]
rs11965633	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527842	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527994	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528443	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529234	0.81[ASN][1000 genomes]
rs12529782	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1273706	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273718	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1273720	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273724	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1273728	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1273731	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273732	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273738	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273742	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1273743	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1273746	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1290678	0.81[EUR][1000 genomes]
rs1392863	0.87[EUR][1000 genomes]
rs1604278	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17083139	0.81[ASN][1000 genomes]
rs17083187	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776817	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1846866	0.84[AMR][1000 genomes]
rs1935940	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2133994	0.81[ASN][1000 genomes]
rs2138504	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2138505	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs218867	0.85[EUR][1000 genomes]
rs2202066	0.87[AMR][1000 genomes]
rs2203588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2203589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2358136	0.81[ASN][1000 genomes]
rs2358137	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102641	0.81[ASN][1000 genomes]
rs3905223	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs391331	0.83[EUR][1000 genomes]
rs407586	0.84[EUR][1000 genomes]
rs4321860	0.87[AMR][1000 genomes]
rs443149	0.83[EUR][1000 genomes]
rs4946535	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4946537	0.81[ASN][1000 genomes]
rs4946547	0.84[AMR][1000 genomes]
rs56139973	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56822960	0.82[ASN][1000 genomes]
rs59805136	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59919987	0.81[ASN][1000 genomes]
rs60378317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569174	0.87[AMR][1000 genomes]
rs6905696	0.81[ASN][1000 genomes]
rs6905992	0.81[ASN][1000 genomes]
rs6921681	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931402	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536406	0.81[ASN][1000 genomes]
rs73536417	0.81[ASN][1000 genomes]
rs73536420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536428	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536430	0.81[ASN][1000 genomes]
rs73536471	0.81[ASN][1000 genomes]
rs73536481	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73536482	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs767743	0.81[ASN][1000 genomes]
rs7748115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751291	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7756848	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769564	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772236	0.81[ASN][1000 genomes]
rs785395	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs785399	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs884045	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9320791	0.87[EUR][1000 genomes]
rs9372641	0.84[AMR][1000 genomes]
rs9372642	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9372643	0.82[AMR][1000 genomes]
rs9375004	0.81[EUR][1000 genomes]
rs9375007	0.84[AMR][1000 genomes]
rs9385187	0.81[AMR][1000 genomes]
rs9387920	0.83[EUR][1000 genomes]
rs9387922	0.87[AMR][1000 genomes]
rs9387924	0.81[EUR][1000 genomes]
rs9398622	0.87[EUR][1000 genomes]
rs9401368	0.83[EUR][1000 genomes]
rs9401373	0.84[AMR][1000 genomes]
rs9401374	0.82[AMR][1000 genomes]
rs953616	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv464037	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604571	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv886593	chr6:121362591-121414770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121389800-121390600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr6:121390000-121390800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:121390200-121390600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:121390200-121390600	ZNF genes & repeats	Aorta	Aorta
5	chr6:121390200-121390600	ZNF genes & repeats	Pancreas	Pancrea
6	chr6:121390200-121390800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:121390200-121390800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:121390200-121390800	ZNF genes & repeats	Ovary	ovary

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