Variant report

Variant	rs940238
Chromosome Location	chr11:87307799-87307800
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1010308	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751169	0.95[JPT][hapmap]
rs10792967	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10792969	0.89[ASN][1000 genomes]
rs10792970	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898738	0.89[ASN][1000 genomes]
rs10898740	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898741	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898750	0.92[EUR][1000 genomes]
rs10898758	0.90[EUR][1000 genomes]
rs11235216	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235217	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235218	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235219	0.89[ASN][1000 genomes]
rs11235220	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235222	0.93[ASN][1000 genomes]
rs11235223	0.90[ASN][1000 genomes]
rs11235234	0.83[EUR][1000 genomes]
rs11235239	0.90[EUR][1000 genomes]
rs11235240	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1194876	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs12806398	0.84[EUR][1000 genomes]
rs12806906	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12807875	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1320391	0.89[ASN][1000 genomes]
rs2019620	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2097037	0.90[ASN][1000 genomes]
rs2097039	0.85[ASN][1000 genomes]
rs2097040	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2156452	0.87[ASN][1000 genomes]
rs2156455	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2187329	0.87[ASN][1000 genomes]
rs2212951	0.85[ASN][1000 genomes]
rs2212955	0.91[ASN][1000 genomes]
rs2226840	0.89[ASN][1000 genomes]
rs2226842	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34815829	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35632205	0.90[EUR][1000 genomes]
rs3892758	0.82[ASN][1000 genomes]
rs3924408	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4084199	0.81[ASN][1000 genomes]
rs4463863	0.89[ASN][1000 genomes]
rs4533056	0.87[EUR][1000 genomes]
rs4943988	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944726	0.88[ASN][1000 genomes]
rs4944727	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944729	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944731	0.93[ASN][1000 genomes]
rs6592388	0.89[ASN][1000 genomes]
rs6592396	1.00[JPT][hapmap]
rs7127034	0.87[ASN][1000 genomes]
rs7924703	0.88[ASN][1000 genomes]
rs7935995	0.91[EUR][1000 genomes]
rs7948614	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv832224	chr11:87162121-87355923	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv898075	chr11:87278074-87375119	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	esv2760195	chr11:87295119-87329156	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv555715	chr11:87307553-87349407	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87296400-87313600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:87306200-87308000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:87307600-87308600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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